View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18723_low_4 (Length: 430)
Name: NF18723_low_4
Description: NF18723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18723_low_4 |
 | |
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| [»] scaffold0002 (2 HSPs) |
| | |
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| [»] scaffold1779 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 18342813 - 18343092
Alignment:
| Q |
11 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaattt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18342813 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaattt |
18342912 |
T |
|
| Q |
111 |
ggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatcaattcgcgggctc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18342913 |
ggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatcaattcgcgggctc |
18343012 |
T |
|
| Q |
211 |
cgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18343013 |
cgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt |
18343092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 48288757 - 48288862
Alignment:
| Q |
11 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaattt |
110 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||||||||||||||||| ||| |||| | ||| |||||||||||||||||||||||||||||| |
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|
| T |
48288757 |
atcatcatactttattattatatcatcaccacgttttagttctttacaa----gtataatt-gactcctaatcacttcagatctttctaaagatgaattt |
48288851 |
T |
|
| Q |
111 |
ggtactgcttt |
121 |
Q |
| |
|
| |||| |||| |
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|
| T |
48288852 |
gatactccttt |
48288862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 41737510 - 41737432
Alignment:
| Q |
119 |
ttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatc |
197 |
Q |
| |
|
|||||| ||||| ||||||| | ||||||||| ||||||||| | ||||||||| ||||| ||||| ||||||||||| |
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|
| T |
41737510 |
tttttttattactgcaacaaaattgtcaccaacataagcataatgccgattactatctcctgtgatttgaatacacatc |
41737432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 36840586 - 36840865
Alignment:
| Q |
11 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaattt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840586 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaattt |
36840685 |
T |
|
| Q |
111 |
ggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatcaattcgcgggctc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840686 |
ggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatcaattcgcgggctc |
36840785 |
T |
|
| Q |
211 |
cgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36840786 |
cgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt |
36840865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 164551 - 164272
Alignment:
| Q |
11 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaattt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
164551 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaattt |
164452 |
T |
|
| Q |
111 |
ggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatcaattcgcgggctc |
210 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
164451 |
gatactgcttttttgattacatcaacaacaatgtcaccaatataagcataccgttgattactagctcctatgattcgaatacagatcaattcacgggctc |
164352 |
T |
|
| Q |
211 |
cgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
164351 |
cgctattatcggctacatttaaataggtttgaggttgaatcatatcattttttactatctttcagtcaaaaagttgaagt |
164272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 261
Target Start/End: Original strand, 277580 - 277794
Alignment:
| Q |
50 |
ttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagcaacaacaatgtcac |
147 |
Q |
| |
|
||||||||| ||||||||||||||||| | || ||||| |||||||||| || | |||||| | ||| | ||||||||||||||||| || |||| |
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|
| T |
277580 |
ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagcaacaataacatcac |
277677 |
T |
|
| Q |
148 |
caatataagcataccgtcgattactagc---tcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgagg |
244 |
Q |
| |
|
||||| |||||| || |||||| ||| |||||||| ||||||||||||||||| || ||||| ||||| || |||||||||||| ||| ||||| |
|
|
| T |
277678 |
caatacgagcatatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg |
277777 |
T |
|
| Q |
245 |
ttgaatcatatcatttt |
261 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
277778 |
ttgaatcatattatttt |
277794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 14249175 - 14249454
Alignment:
| Q |
11 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaattt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14249175 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaattt |
14249274 |
T |
|
| Q |
111 |
ggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatcaattcgcgggctc |
210 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
14249275 |
gatactgcttttttgattacatcaacaacaatgtcaccaatataagcataccgttgattactagctcctatgattcgaatacagatcaattcacgggctc |
14249374 |
T |
|
| Q |
211 |
cgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14249375 |
cgctattatcggctacatttaaataggtttgaggttgaatcatatcattttttactatctttcagtcaaaaagttgaagt |
14249454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 75 - 290
Target Start/End: Original strand, 46699127 - 46699342
Alignment:
| Q |
75 |
gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46699127 |
gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
46699226 |
T |
|
| Q |
175 |
ctcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttca |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46699227 |
ctcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttca |
46699326 |
T |
|
| Q |
275 |
gtcaaaaagttgaagt |
290 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
46699327 |
gtcaaaaagttgaagt |
46699342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 18375254 - 18375193
Alignment:
| Q |
227 |
atttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt |
290 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
18375254 |
atttaaataggtttgaggttgaatcatat-attttttt-tatctttcaatcaaaaagttgaagt |
18375193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 42 - 253
Target Start/End: Complemental strand, 873 - 662
Alignment:
| Q |
42 |
cgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaa |
141 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| || || |||||||||||||| ||||| |||||||||| || |
|
|
| T |
873 |
cgtttgagttctttacaagtacgtacaattacagctctgatcacttctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataa |
774 |
T |
|
| Q |
142 |
tgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttg |
241 |
Q |
| |
|
||||||||||| |||||| || ||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||| |||||||| |||| ||| || |
|
|
| T |
773 |
cgtcaccaatatgagcatatcggcgattactagctcctatgactcgaatacacatcaattctcgggccccgctgttatctgctacattcaaatgggtctg |
674 |
T |
|
| Q |
242 |
aggttgaatcat |
253 |
Q |
| |
|
|||||||||||| |
|
|
| T |
673 |
aggttgaatcat |
662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 176 - 290
Target Start/End: Original strand, 11542905 - 11543019
Alignment:
| Q |
176 |
tcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcag |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11542905 |
tcctatgattcgaatacacatcaattcgcgggctccgctattatcggctatatttaaataggtttgaggttgaatcatatcatttttttctatctttcag |
11543004 |
T |
|
| Q |
276 |
tcaaaaagttgaagt |
290 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11543005 |
tcaaaaagttgaagt |
11543019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 46634212 - 46634273
Alignment:
| Q |
227 |
atttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaa |
288 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46634212 |
atttaagtaggtttgaggttgaatcatatcatttttttctatctttcaatcaaaaagttgaa |
46634273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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