View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18724_high_19 (Length: 222)
Name: NF18724_high_19
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18724_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 30903868 - 30903678
Alignment:
| Q |
17 |
cataggattatcatcaactattggattgagaaattatcaaattctaacgcactaatcatcctagaccaatacgcaaaacaacgatgagtaaaagtatgat |
116 |
Q |
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| T |
30903868 |
cataggattatcatcaactattggattgagaaattatcaaattctaacgcactaatcatcctagaccaatacgcaaaacaacgatgagtaaaagtatgat |
30903769 |
T |
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| Q |
117 |
gtactattatctagtcacttaagtaactcatcagttaccactagtag-nnnnnnnngcttggtacaatgttgttggtactaattgtttact |
206 |
Q |
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| T |
30903768 |
gtactattatctagtcacttaagtaactcatcagttaccactagtagtttctttttgcttggtacaatgttgttggtattaattgtttact |
30903678 |
T |
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