View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18724_high_2 (Length: 658)
Name: NF18724_high_2
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18724_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 5e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 255 - 444
Target Start/End: Complemental strand, 43906902 - 43906713
Alignment:
| Q |
255 |
cattggctgtgtttagtgtttaccattttgtataactttttggtttcaacaatccttgaaacattttcactctgagaaagaattgtattgaaacaggatc |
354 |
Q |
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| T |
43906902 |
cattggctgtgtttagtgtttaccattttgtataactttttggtttcaacaatccttgaaacattttcactctgagaaagaattgtattgaaacaggatc |
43906803 |
T |
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| Q |
355 |
caaattaatgaggatgttaattgctatgttgaggtgaaaatgaaaaataggctgaaaataagaatgaacgttaaccttatataatatgtg |
444 |
Q |
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| T |
43906802 |
caaattaatgaggatgttaattgctatgtaaaggtgaaaatgaaaaataggctgaaaataagaatgaacgttaaccttatataatatgtg |
43906713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 43907154 - 43906972
Alignment:
| Q |
1 |
agaatgaatcaaaatttacaagaaagttaaagattacccttccatatgcgttgtattcaagagaattcttgagaagatcaacaagatctttcgtaagaaa |
100 |
Q |
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| T |
43907154 |
agaatgaatcaaaatttacaagaaagttaaagattacccttccatatgcattgtattcaagagaattcttgagaagatcaacaagatctttcttaagaaa |
43907055 |
T |
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| Q |
101 |
tttttgcactgcgtttcgcttcttccttattgtttctaatcttgtcttaatcaacttcaagcaatttttgctgttaattttcc |
183 |
Q |
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| T |
43907054 |
tttttgcactgcgtttcgcttcttccttattgtttctaatcttgtctttatcaacttcaagcaatttttgctgttaattttcc |
43906972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 490 - 641
Target Start/End: Complemental strand, 43906653 - 43906502
Alignment:
| Q |
490 |
atggttttataatgaggaatgagaaaacttagagaggaagattaggatatgatatgacagaaaatgaggtgtaaaagagagaatattacaagaattaaag |
589 |
Q |
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| T |
43906653 |
atggttttataatgaggaatgagaaaacttagagaggaagattaggatatgatatgacagaaaatgaggtgtaaaagagagaatattacaagaattaaag |
43906554 |
T |
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| Q |
590 |
ggtgttgtctctctggagttggtaaccattaagaatcataggtgattcatgt |
641 |
Q |
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| T |
43906553 |
ggtgttgtctctctggagttggtaaccattaagaatcataggtgattcatgt |
43906502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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