View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18724_high_5 (Length: 453)
Name: NF18724_high_5
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18724_high_5 |
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| [»] scaffold0110 (5 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 30389 - 29956
Alignment:
| Q |
1 |
cacaagataaaaacatcagaagaacaaattaaataaaccacttagtgcataataagaatcacatcaagtttgatgaaatcacagttgcaccatgtgactt |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30389 |
cacaagataaaaacatcagaagaacaaattgaataaaccacttagtgcataataagaatcacatcaagtttgacgaaatcacagttgcaccatgtgactt |
30290 |
T |
|
| Q |
101 |
tgttgaagcggcaaagtgtagtttttgccgaaatcactatggcacatcatgactctgacaaactcactgctaatccaaacacatacttaatctaaaaacg |
200 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30289 |
tgttgaagctgcaaagtgtagtttttgcctaaatcactatggcacatcatgactctgacaaactcactgctaatccaaacacatacttaatctaaaaacg |
30190 |
T |
|
| Q |
201 |
aatcaaaatactaaaattacctggtatttctctctatatctttgagcagcagcagcatgtgacaatatcaaattgtgagctacagtataaggctcagttc |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30189 |
aatcaaaatactaatattacctggtatttctctctatatctttgagcagcagcagcatgtgacaatatcaaattgtgagctacagtataaggctcagttc |
30090 |
T |
|
| Q |
301 |
ctgaatttccagctgtacaatttccatattcttttgaacatcttccaggggcaaaaaagccattatcataaccaagtgcagcaacaactcttggttcatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30089 |
ctgaatttccagctgtacaatttccatattcttttgaacatcttccaggggcaaaaaagccattatcataaccaagtgcagcaacaactcttggttcatt |
29990 |
T |
|
| Q |
401 |
gaaggtcatccaattcttaactctgtctccaaat |
434 |
Q |
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| T |
29989 |
gaaggtcatccaattcttaactctgtctccaaat |
29956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 136 - 434
Target Start/End: Complemental strand, 13397 - 13099
Alignment:
| Q |
136 |
actatggcacatcatgactctgacaaactcactgctaatccaaacacatacttaatctaaaaacgaatcaaaatactaaaattacctggtatttctctct |
235 |
Q |
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|||||| |||||| ||| ||| |||||||| | ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
13397 |
actatgacacatcgtgattctagcaaactcatggataatctaaacacacacttaatctaaaaatgaatcaaaatactaaaattacctggtatttctgtct |
13298 |
T |
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| Q |
236 |
atatctttgagcagcagcagcatgtgacaatatcaaattgtgagctacagtataaggctcagttcctgaatttccagctgtacaatttccatattctttt |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13297 |
atatctttgagcagcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattctttt |
13198 |
T |
|
| Q |
336 |
gaacatcttccaggggcaaaaaagccattatcataaccaagtgcagcaacaactcttggttcattgaaggtcatccaattcttaactctgtctccaaat |
434 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
13197 |
gaacaccttccaggggcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaat |
13099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 136 - 434
Target Start/End: Complemental strand, 21134 - 20836
Alignment:
| Q |
136 |
actatggcacatcatgactctgacaaactcactgctaatccaaacacatacttaatctaaaaacgaatcaaaatactaaaattacctggtatttctctct |
235 |
Q |
| |
|
|||||| |||||| ||| ||| |||||||| | ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
21134 |
actatgacacatcgtgattctagcaaactcatggataatctaaacacacacttaatctaaaaatgaatcaaaatactaaaattacctggtatttctgtct |
21035 |
T |
|
| Q |
236 |
atatctttgagcagcagcagcatgtgacaatatcaaattgtgagctacagtataaggctcagttcctgaatttccagctgtacaatttccatattctttt |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21034 |
atatctttgagcagcagcagcatgtgacaatatcaaattgtgagctacaatataaggctcagttcctgaatttccagcagtacaatttccatattctttt |
20935 |
T |
|
| Q |
336 |
gaacatcttccaggggcaaaaaagccattatcataaccaagtgcagcaacaactcttggttcattgaaggtcatccaattcttaactctgtctccaaat |
434 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
20934 |
gaacaccttccaggggcaaaaaagccagtatcataaccaagtgcagcaataactcttggttcattgaaagtcatccagttcttaactctgtctccaaat |
20836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 41 - 166
Target Start/End: Complemental strand, 13523 - 13398
Alignment:
| Q |
41 |
cttagtgcataataagaatcacatcaagtttgatgaaatcacagttgcaccatgtgactttgttgaagcggcaaagtgtagtttttgccgaaatcactat |
140 |
Q |
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|||||||||| || | ||||| ||| ||||||| ||||||||||||||||| ||||| ||||||||||| |||| ||||||||||| |||||||||||| |
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| T |
13523 |
cttagtgcatgatgaaaatcaaatcgagtttgacgaaatcacagttgcaccttgtgattttgttgaagcttcaaaatgtagtttttggcgaaatcactat |
13424 |
T |
|
| Q |
141 |
ggcacatcatgactctgacaaactca |
166 |
Q |
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|||||||| ||| | ||||||||||| |
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| T |
13423 |
ggcacatcgtgattgtgacaaactca |
13398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 41 - 166
Target Start/End: Complemental strand, 21260 - 21135
Alignment:
| Q |
41 |
cttagtgcataataagaatcacatcaagtttgatgaaatcacagttgcaccatgtgactttgttgaagcggcaaagtgtagtttttgccgaaatcactat |
140 |
Q |
| |
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|||||||||| || | ||||| ||| ||||||| ||||||||||||||||| ||||| ||||||||||| |||| ||||||||||| |||||||||||| |
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| T |
21260 |
cttagtgcatgatgaaaatcaaatcgagtttgacgaaatcacagttgcaccttgtgattttgttgaagcttcaaaatgtagtttttggcgaaatcactat |
21161 |
T |
|
| Q |
141 |
ggcacatcatgactctgacaaactca |
166 |
Q |
| |
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|||||||| ||| | ||||||||||| |
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| T |
21160 |
ggcacatcgtgattgtgacaaactca |
21135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 31639108 - 31639068
Alignment:
| Q |
393 |
ggttcattgaaggtcatccaattcttaactctgtctccaaa |
433 |
Q |
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|||||||||||||| ||||| | |||||||||||||||||| |
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| T |
31639108 |
ggttcattgaaggtaatccagtgcttaactctgtctccaaa |
31639068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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