View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18724_high_7 (Length: 411)
Name: NF18724_high_7
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18724_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 32113495 - 32113892
Alignment:
| Q |
1 |
catgggagatctcatttcttaaaagctcctaattttttgttgtcaattttaactctctaatcacacagtttgaggtctcaatgagatttattcagattga |
100 |
Q |
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| T |
32113495 |
catgggagatctcatttcttaaaagctcctaattttttgttgtcaattttaactctctaatcacacagtttgaagtctcaatgagatttattcagattga |
32113594 |
T |
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| Q |
101 |
tccaacaacataacattcgtagcaatgaccgattttatgataataatgtctcacaatcacaagtgcagatatttagagaatgaggttttgaatcttaaat |
200 |
Q |
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| T |
32113595 |
tccgacaacataacattcgtagcaatgaccgattttatgataataatgtctcacaatcacaagtgtagatatttagagaatgaggttttgaatcttaaat |
32113694 |
T |
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| Q |
201 |
tttccactttttcatatttatgagatgtaagtttaatcattaatcaatttgacaaaaaagaaaataatgatgatcttaggtgtatcatatcttttacata |
300 |
Q |
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| T |
32113695 |
tttccactttttcatatttatgagatgtaagtttaatcattaatcaatttgacaaaaaagaaaataatgatgatcttaggtgtattataacttttactta |
32113794 |
T |
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| Q |
301 |
attttctttaggcaaaagtgtgtgtannnnnnnattatattgtggccagaatattattactaccatatcttttatttaattttctttagtcaaaagtg |
398 |
Q |
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| T |
32113795 |
attttctttagtcaaaagtgtgtgtatttttttattatattgtggccagaatattattactaccatatcttttatttaattttctttagtcaaaagtg |
32113892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 32113858 - 32113898
Alignment:
| Q |
286 |
catatcttttacataattttctttaggcaaaagtgtgtgta |
326 |
Q |
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| T |
32113858 |
catatcttttatttaattttctttagtcaaaagtgtgtgta |
32113898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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