View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18724_high_9 (Length: 405)
Name: NF18724_high_9
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18724_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 7 - 387
Target Start/End: Original strand, 24634350 - 24634730
Alignment:
| Q |
7 |
ctgatatgaaaatgaaggttaaacatgtgtatctaaagattattgtgttttattgctggaaacaagtcttacaaaagcctagttctgatttcttgtaaat |
106 |
Q |
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| T |
24634350 |
ctgatatgaaaatgaaggttaaacatgtgtatctaaagattattgtgttttattgctggaaacaagtcttacaagagcctagttctgatttcttgtaaat |
24634449 |
T |
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| Q |
107 |
gaaatgtctcatttattgataacgtgatgaattgatcataatgaactcaatggaccttatttatacatcagtctatatgaaagtgaagaagataacaagg |
206 |
Q |
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| T |
24634450 |
gaaatgtctcatttattgataacttgatgaattgatcataatgaactcaatggaccttatttatacatcagtctatatgaaagtgaagaagataacaagg |
24634549 |
T |
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| Q |
207 |
aacaatagctaactagtaaacaggatcttctaatttatgtttcaattgtaaacttttataagtaaatttcaaggtttcaacacaaactgtgtatgtgtta |
306 |
Q |
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| T |
24634550 |
aacaatagttaagtagtaaacaggatcttctaatttatgtttcaattgtaaacttctataagtaaatttcaaggtttcaacacaaactgtgtatgtgtta |
24634649 |
T |
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| Q |
307 |
ctgctgggtttaaaatgtaattgtgtttctaattttcgacaaatgttggattaatatgtggatcgtcatatgtattatttt |
387 |
Q |
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| T |
24634650 |
ctgctgggtttaaaatgtaattgtgtttctaattttcaacaaatgttggattaatatgtggatcgtcatatgtattatttt |
24634730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 24628511 - 24628559
Alignment:
| Q |
239 |
atttatgtttc-aattgtaaacttttataagtaaatttcaaggtttcaa |
286 |
Q |
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| T |
24628511 |
atttatgtttctaattgtaaacttttataagtaaatttcaaggtttcaa |
24628559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 42542372 - 42542330
Alignment:
| Q |
251 |
attgtaaacttttataagtaaatttcaaggtttcaacacaaac |
293 |
Q |
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| T |
42542372 |
attgtaaacatttataagtaaatttcaaggtttcaacagaaac |
42542330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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