View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18724_low_1 (Length: 665)
Name: NF18724_low_1
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18724_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 19 - 658
Target Start/End: Complemental strand, 43454073 - 43453435
Alignment:
| Q |
19 |
gattgcatcctaaaagatatggttttgactagaggcttaacaagttcgataatataaagtaaattgtgcttctgtaagtgtaatcctgctaatgattaaa |
118 |
Q |
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| T |
43454073 |
gattgcatcctaaaagatatggttttgactagaggcttaacaagttcgataatataaagtaaattgtgctgctgtaagtgtaatcctgctaatgattaaa |
43453974 |
T |
|
| Q |
119 |
aagatttcattcgtacaagtgtnnnnnnnnnnnttacactttcaatcaattgtacatcatcaagtcattgcttttggggcacttgggtcatgctccaaat |
218 |
Q |
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| T |
43453973 |
aagatttaattcgtacaagtgtaaaaaaaaaa-ttacactttcaatcaattgcacatcatcaagtcattgcttttggggcacttgggtcatgctccaaat |
43453875 |
T |
|
| Q |
219 |
ttctaatcccaaaggtgttaagagtccaacattgaatgagataaggcataaaatatgtttataagcaggtgtagtcttccttttacgagccgtttattta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43453874 |
ttctaatcccaaaggtgttaagagtccaacattgaatgagataaggcataaaatatgtttataagcaggtgtagtcttccttttacgagccgtttattta |
43453775 |
T |
|
| Q |
319 |
agggttaatccaacttttaagtataactactactaaagtcactaacccgcattttatgaatgactacttttaaattcacacatatgattgagtatagttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43453774 |
agggttaatccaacttttaagtataactactactaaagtcactaacccacattttatgaatgactacttttaaattcacacatatgattgagtatagttt |
43453675 |
T |
|
| Q |
419 |
gttgatagtataaggcagtttactgggaaaaagtaattaaactttgattaaaataagtagctagaaaacgaactttgaagctcacaaaagaacaatggtt |
518 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43453674 |
gttgatagtataaggcagtttactggaaaaaagtaattaaactttgattaaaataagtagctagaaaacgaactttgaagctcacaaaagaacaatggtt |
43453575 |
T |
|
| Q |
519 |
agagattggtataatttggagaaggggattatttccaaacctggtttgaagaaaatggacagtccaaaatcaattgccataagagtggaatcttcgtctc |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43453574 |
agagattggtataatttggagaaggggattatttccaaacctggtttgaagaaaatggacagtccaaaatcaattgccataagagtggaatcttcatctc |
43453475 |
T |
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| Q |
619 |
catcaacaaaaaagaaatttacaggcttaagatcatgatg |
658 |
Q |
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|||||||||||| ||||||| |||||||||||||| |||| |
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| T |
43453474 |
catcaacaaaaaggaaattttcaggcttaagatcacgatg |
43453435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 512 - 653
Target Start/End: Complemental strand, 43463020 - 43462879
Alignment:
| Q |
512 |
aatggttagagattggtataatttggagaaggggattatttccaaacctggtttgaagaaaatggacagtccaaaatcaattgccataagagtggaatct |
611 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||||| ||||||| |||||| |
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| T |
43463020 |
aatggttagagattggtataaattggagaaggggattatttccatacctggtttgaagaaactagacaatccaaaatcaattgctttaagagttgaatct |
43462921 |
T |
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| Q |
612 |
tcgtctccatcaacaaaaaagaaatttacaggcttaagatca |
653 |
Q |
| |
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|| | |||||||||||||| |||||| |||||||||||||| |
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| T |
43462920 |
tcatgtccatcaacaaaaagaaaattttcaggcttaagatca |
43462879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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