View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18724_low_10 (Length: 394)
Name: NF18724_low_10
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18724_low_10 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 394
Target Start/End: Complemental strand, 30752 - 30374
Alignment:
| Q |
16 |
atcaattgagcccttcacaagtttcacttcctccttagtaaactttgggagtctattcccaacaatattttgcatagttcttggatactcaccataaaca |
115 |
Q |
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| T |
30752 |
atcaattgagcccttcacaagtttcacttcctccttagtaaactttgggagtctattcccaacaatattttgcatagttcttggatactcaccataaaca |
30653 |
T |
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| Q |
116 |
aggggatgaatgaacctgtggaaatttataaacaacttaaaacacactacaaaattaacaaaatgacaaaacttaggtacaattcttctggcgttgtttc |
215 |
Q |
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| T |
30652 |
aggggatgaatgaacctgtggaaatttataaacaacttaaaacacactacgaaattaacaaaatgacaaaacttaggtacaattcttctggcgttgtttc |
30553 |
T |
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| Q |
216 |
aactagaaaagccaacaatttttaccatccaatatgaaagtctctagctctttgagcagcatagttatcagcctttgatcttgtaagaggttcataccaa |
315 |
Q |
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| T |
30552 |
aactagaaaagccaacaatttttaccatccaatatgaaagtctctagctctttgagcagcatagttatcagcctttgatcttgtaagaggctcataccaa |
30453 |
T |
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| Q |
316 |
acaaaatccaacaaaattccaatcctacccttttgcttttcctnnnnnnnccagaatcatcaccacaagataaaaacat |
394 |
Q |
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| T |
30452 |
acaaaatccaacaaaattccaatcctacccttttgcttttcctaaaaaaaccagaatcatcaccacaagataaaaacat |
30374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 224 - 358
Target Start/End: Complemental strand, 22188 - 22054
Alignment:
| Q |
224 |
aagccaacaatttttaccatccaatatgaaagtctctagctctttgagcagcatagttatcagcctttgatcttgtaagaggttcataccaaacaaaatc |
323 |
Q |
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| T |
22188 |
aagccaacaatttttaccatccaatatgaaaatctctagctctttgagcagcatagttatcagcctttgatcttgtaagagactcataccaaactaaatc |
22089 |
T |
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| Q |
324 |
caacaaaattccaatcctacccttttgcttttcct |
358 |
Q |
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| T |
22088 |
caacaaaattccaatactacccttttgtttttcct |
22054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 22834 - 22694
Alignment:
| Q |
16 |
atcaattgagcccttcacaagtttcacttcctccttagtaaactttgggagtctattcccaacaatattttgcatagttcttggatactcaccataaaca |
115 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||| || || |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22834 |
atcaatggagcccttcacaagattcacttcctccttagtaaactttggaagcctgttcccaacaatagtttgcatagttcttggatactcaccataaaca |
22735 |
T |
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| Q |
116 |
aggggatgaatgaacctgtggaaatttataaacaacttaaa |
156 |
Q |
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| T |
22734 |
atgggatgaaggaacctgtggaaatttataaacaccttaaa |
22694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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