View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18724_low_11 (Length: 352)
Name: NF18724_low_11
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18724_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 112 - 289
Target Start/End: Complemental strand, 46533275 - 46533099
Alignment:
| Q |
112 |
caaaatgtcgaatggggctggtgagtccacaaatcatgtcttatagaggtcactttaacacatttcagccttaagattttagaaatctttagttgcattg |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46533275 |
caaaatgtcgaatggggctg-tgagtccacaaatcatgtcttatagaggtcactttaacacatttcaaccttaagattttagaaatctttagttgcattg |
46533177 |
T |
|
| Q |
212 |
catgtgtctatctgacatatgccaaaaggattatgtctaacacatacaaaatatattttttatatataaaagttgtta |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46533176 |
catgtgtctatctgacatatgccaaaaggattatgtctaacacatacaaaatatattttttatatataaaagttgtta |
46533099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 46533391 - 46533317
Alignment:
| Q |
39 |
tatagagacatattacattatcctaagggaagttttgttagtggagggcggtgttttagtcagagtgccaggcca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46533391 |
tatagagacatattacattatcctaagggaagttttgttagtggagggcggtgttttagtcagagtgccaggcca |
46533317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University