View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18724_low_13 (Length: 293)

Name: NF18724_low_13
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18724_low_13
NF18724_low_13
[»] chr7 (6 HSPs)
chr7 (7-276)||(18779947-18780217)
chr7 (52-113)||(25078288-25078349)
chr7 (65-109)||(4043009-4043053)
chr7 (52-130)||(18673931-18674008)
chr7 (59-96)||(25079373-25079410)
chr7 (72-109)||(31412106-31412143)
[»] chr3 (2 HSPs)
chr3 (7-179)||(1605213-1605387)
chr3 (206-276)||(1605387-1605457)
[»] chr5 (2 HSPs)
chr5 (52-96)||(3289718-3289762)
chr5 (68-112)||(17238292-17238336)
[»] chr2 (1 HSPs)
chr2 (53-104)||(14437218-14437269)
[»] chr4 (2 HSPs)
chr4 (66-113)||(4466850-4466897)
chr4 (65-113)||(43087386-43087434)
[»] chr1 (1 HSPs)
chr1 (64-92)||(10294337-10294365)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 18779947 - 18780217
Alignment:
Q  7 tagattattctcaaacacctaacggtcacaatatacacacatcacccaaagaaaatatctaactacatctcacaacactctaagacaagaatataagaaa 106  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18779947 tagattattctcaaacacctaacggtcacaata--cacacatcacccaaagaaaatatctaactacatctcacaacactctaagacaagaatataagaaa 18780044  T
Q  107 aaagaaacgagaaagatataaactaaaatgtttctgacttaatgca---tgtaacaaagagatagaacctatatataggaatttctatgtttgtcttgca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18780045 aaagaaacgagaaagatataaactaaaatgtttctgacttaatgcatcttgtagcaaagagatagaacctatatataggaatttctatgtttgtcttgca 18780144  T
Q  204 atttaagaaaaaacctcgtggcatgcaagacttgccaaacaagaaactaaccaagtgaaggaaccaccatgct 276  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  18780145 atttaagaaaaaaccttgtggcatgcaagacttgccaagcaagaaactaaccaagtgatggaaccaccatgct 18780217  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 25078349 - 25078288
Alignment:
Q  52 ccaaagaaaatatctaactacatctcacaacactctaagacaagaatataagaaaaaagaaa 113  Q
    |||||| ||||| |||| ||||||||||||||||||||||||||| ||||||| | ||||||    
T  25078349 ccaaagcaaatacctaattacatctcacaacactctaagacaagagtataagagagaagaaa 25078288  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 4043053 - 4043009
Alignment:
Q  65 ctaactacatctcacaacactctaagacaagaatataagaaaaaa 109  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||    
T  4043053 ctaactacatctcacaacactcttagacaatagtataagaaaaaa 4043009  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 18673931 - 18674008
Alignment:
Q  52 ccaaagaaaatatctaactacatctcacaacactctaagacaagaatataagaaaaaagaaacgagaaagatataaact 130  Q
    |||||||||||| |||||||||||||| |||| |||||||  ||| ||||||| |||||||| |||  | |||||||||    
T  18673931 ccaaagaaaatacctaactacatctca-aacattctaagatcagagtataagagaaaagaaaagagccaaatataaact 18674008  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 25079410 - 25079373
Alignment:
Q  59 aaatatctaactacatctcacaacactctaagacaaga 96  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  25079410 aaatatctaactacatcttacaatactctaagacaaga 25079373  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 31412106 - 31412143
Alignment:
Q  72 catctcacaacactctaagacaagaatataagaaaaaa 109  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  31412106 catctcacaacattctaagacaagattataagaaaaaa 31412143  T

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Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 1605213 - 1605387
Alignment:
Q  7 tagattattctcaaacacctaacggtcacaatatacacacatcacccaaagaaaatatctaactacatctcacaacactctaagacaagaatata-agaa 105  Q
    ||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| |||| | ||    
T  1605213 tagattattctcaaacacc-aacagccacaatatacacacaacacccaaagaaaatacctaactacatctcataacactctaagacaagagtatataaaa 1605311  T
Q  106 aaaagaaacgagaaagatataaactaaaatgtttctgacttaatgca---tgtaacaaagagatagaacctatatat 179  Q
    |||||||| ||||||||||||||||||| |||||||||| |||||||   |||| ||||||||||||||||||||||    
T  1605312 aaaagaaatgagaaagatataaactaaagtgtttctgac-taatgcaccttgtagcaaagagatagaacctatatat 1605387  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 1605387 - 1605457
Alignment:
Q  206 ttaagaaaaaacctcgtggcatgcaagacttgccaaacaagaaactaaccaagtgaaggaaccaccatgct 276  Q
    |||||||||||||||||||||||||||| || | || ||||||| ||||||||||||||||||||| ||||    
T  1605387 ttaagaaaaaacctcgtggcatgcaagattttctaagcaagaaagtaaccaagtgaaggaaccaccttgct 1605457  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 3289762 - 3289718
Alignment:
Q  52 ccaaagaaaatatctaactacatctcacaacactctaagacaaga 96  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  3289762 ccaaagaaaatacctaactacatctcacaacactctaagaaaaga 3289718  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 17238292 - 17238336
Alignment:
Q  68 actacatctcacaacactctaagacaagaatataagaaaaaagaa 112  Q
    |||||||||||| |||||||||||||| ||||||| |||||||||    
T  17238292 actacatctcacgacactctaagacaataatataataaaaaagaa 17238336  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 14437218 - 14437269
Alignment:
Q  53 caaagaaaatatctaactacatctcacaacactctaagacaagaatataaga 104  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||| |||||||    
T  14437218 caaagtaaatacctaactacatctcacaacactttaagacaagagtataaga 14437269  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 4466897 - 4466850
Alignment:
Q  66 taactacatctcacaacactctaagacaagaatataagaaaaaagaaa 113  Q
    |||||||||||||||||| |||||||||||| || |||| ||||||||    
T  4466897 taactacatctcacaacattctaagacaagagtaaaagagaaaagaaa 4466850  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 43087434 - 43087386
Alignment:
Q  65 ctaactacatctcacaacactctaagacaagaatataagaaaaaagaaa 113  Q
    |||||||||||||| |||||||||| |||||| ||| ||| ||||||||    
T  43087434 ctaactacatctcataacactctaaaacaagattatgagagaaaagaaa 43087386  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 92
Target Start/End: Original strand, 10294337 - 10294365
Alignment:
Q  64 tctaactacatctcacaacactctaagac 92  Q
    |||||||||||||||||||||||||||||    
T  10294337 tctaactacatctcacaacactctaagac 10294365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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