View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18724_low_14 (Length: 287)

Name: NF18724_low_14
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18724_low_14
NF18724_low_14
[»] chr1 (3 HSPs)
chr1 (5-183)||(31316259-31316432)
chr1 (5-77)||(31315470-31315542)
chr1 (109-182)||(31315367-31315440)
[»] chr6 (1 HSPs)
chr6 (34-94)||(22791221-22791281)
[»] chr4 (1 HSPs)
chr4 (38-94)||(32671339-32671395)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 183
Target Start/End: Complemental strand, 31316432 - 31316259
Alignment:
Q  5 aagatgaagaaacttggattgtgtagttaaataattgtaagtatggtctttgtctttgatttaccattttcaacatccatataacttagatataatnnnn 104  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     ||||||        
T  31316432 aagatgaagaaacttggattgtatagttaaataattgtaagtatggtctttttctttgatttaccattttcaacatccatataac-----tataataaaa 31316338  T
Q  105 nnnntcattgaaacataacaacaaatcattttatgagttaaatataagagtctatgtgaaataagcttttaaattgata 183  Q
        ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31316337 aaaatcattgaaatataataacaaatcattttatgagttaaatataagagtctatgtgaaataagctcttaaattgata 31316259  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 31315542 - 31315470
Alignment:
Q  5 aagatgaagaaacttggattgtgtagttaaataattgtaagtatggtctttgtctttgatttaccattttcaa 77  Q
    |||||||||| ||||| |||||||||||||||||||  ||||||||||||| | ||||||||| |||||||||    
T  31315542 aagatgaagacacttgaattgtgtagttaaataatttgaagtatggtctttatatttgatttatcattttcaa 31315470  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 31315440 - 31315367
Alignment:
Q  109 tcattgaaacataacaacaaatcattttatgagttaaatataagagtctatgtgaaataagcttttaaattgat 182  Q
    |||||| |||||||  |||||||||||| | |||||||||||||| | ||||||||  ||||| ||||||||||    
T  31315440 tcattggaacataatcacaaatcattttcttagttaaatataagattatatgtgaagcaagctcttaaattgat 31315367  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 22791221 - 22791281
Alignment:
Q  34 aataattgtaagtatggtctttgtctttgatttaccattttcaacatccatataacttaga 94  Q
    |||||||||||||||| ||||| ||||||||||| |  |||||||||| ||||||||||||    
T  22791221 aataattgtaagtatgatctttatctttgatttatcgctttcaacatctatataacttaga 22791281  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 32671339 - 32671395
Alignment:
Q  38 attgtaagtatggtctttgtctttgatttaccattttcaacatccatataacttaga 94  Q
    |||||||||||| ||||| |||||||||||  | |||||||||| ||||||||||||    
T  32671339 attgtaagtatgatctttatctttgatttattactttcaacatctatataacttaga 32671395  T

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