View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18724_low_16 (Length: 277)
Name: NF18724_low_16
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18724_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 7092750 - 7092997
Alignment:
| Q |
15 |
aataataggtctatcattttaaaagaaagaattgcaagcaacaagtgttgtgtggtgagcaaaattttttattcttccattacagatcccggctaattca |
114 |
Q |
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| T |
7092750 |
aataatacgtctatcattttaaaagaaagaattgcaagcaacaagtgttgtgtggtgagcaaaattttttattcttccattacagatcccggctaattca |
7092849 |
T |
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| Q |
115 |
gctggcctcattgagtatagagctcatcctttctggatacaaaaatactgcccaacacatgagctcgacagcactcctcgttgttgtagctgcgaaagaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7092850 |
gctggcctcattgagtatagagctcatcctttctggatacaaaaatactgcccaacacatgagctcgacagcactcctcgttgttgtagctgcgaaagaa |
7092949 |
T |
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| Q |
215 |
tgaaggtcagttatatcagctcccaaaacattccatctcgttgttact |
262 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7092950 |
tggaggtcagttatatcagctcccaaaacattccatctcgttgttact |
7092997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 7104977 - 7105224
Alignment:
| Q |
15 |
aataataggtctatcattttaaaagaaagaattgcaagcaacaagtgttgtgtggtgagcaaaattttttattcttccattacagatcccggctaattca |
114 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7104977 |
aataatacgtctatcattttaaaagaaagaattgcaagcaacaagtgttgtgtggtgagcaaaattttttattcttccattacagatcccggctaattca |
7105076 |
T |
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| Q |
115 |
gctggcctcattgagtatagagctcatcctttctggatacaaaaatactgcccaacacatgagctcgacagcactcctcgttgttgtagctgcgaaagaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7105077 |
gctggcctcattgagtatagagctcatcctttctggatacaaaaatactgcccaacacatgagctcgacagcactcctcgttgttgtagctgcgaaagaa |
7105176 |
T |
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| Q |
215 |
tgaaggtcagttatatcagctcccaaaacattccatctcgttgttact |
262 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7105177 |
tggaggtcagttatatcagctcccaaaacattccatctcgttgttact |
7105224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 109 - 232
Target Start/End: Complemental strand, 33407484 - 33407361
Alignment:
| Q |
109 |
aattcagctggcctcattgagtatagagctcatcctttctggatacaaaaatactgcccaacacatgagctcgacagcactcctcgttgttgtagctgcg |
208 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||| ||| |||| |||| ||| | |||||||||||||||||||| |
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| T |
33407484 |
aattcagctggtctcattgagtatagagcacatcctttctggctacaaaaatactgtccatcacacgagcgcgatggtactcctcgttgttgtagctgtc |
33407385 |
T |
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| Q |
209 |
aaagaatgaaggtcagttatatca |
232 |
Q |
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| |||||| |||||||||| |||| |
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| T |
33407384 |
agagaatggaggtcagttacatca |
33407361 |
T |
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