View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18724_low_18 (Length: 231)
Name: NF18724_low_18
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18724_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 51 - 201
Target Start/End: Complemental strand, 37341359 - 37341209
Alignment:
| Q |
51 |
caatgaaaagccttccgcttatgaactgttgttgtgttcactatgacaggttgcttgcaacggtgacaataagaaaaaggtttattgtccatttctctta |
150 |
Q |
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| T |
37341359 |
caatgaaaagccttctgcttatgaaccgttgttgtgttcactgtggtcggtcgcttgcaacgatgacaataagataaaggtttattgtccctttctctta |
37341260 |
T |
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| Q |
151 |
ttctctataaacaatgcatttgatgctattttatgattattttgtctgtta |
201 |
Q |
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| T |
37341259 |
ttctctataaacattgcatttggtactattttatgattattttgtctgtta |
37341209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 23890912 - 23891044
Alignment:
| Q |
69 |
ttatgaactgttgttgtgttcactatgacaggttgcttgcaacggtgacaataagaaaaaggtttattgtccatttctcttattctctataaacaatgca |
168 |
Q |
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| T |
23890912 |
ttatgaactgttgttgtgttcactgtggccggtcacttgcaactgtgacaataagataaaggtttattgtccatttctcttattctctataaacattgta |
23891011 |
T |
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| Q |
169 |
tttgatgctattttatgattattttgtctgtta |
201 |
Q |
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| T |
23891012 |
tttggtactatttgatgattattttgtctgtta |
23891044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 46885833 - 46885929
Alignment:
| Q |
127 |
aaggtttattgtccatttctcttattctctat-aaacaatgcatttgatgctattttatgattattttgtctgttaattttt-gtcagaataatata |
221 |
Q |
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| T |
46885833 |
aaggtttattatccctttctcttattctctctaaaacaatacatttagtgctattttttatttattttctatgttattttttggtcagcataatata |
46885929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 51 - 201
Target Start/End: Complemental strand, 25889796 - 25889646
Alignment:
| Q |
51 |
caatgaaaagccttccgcttatgaactgttgttgtgttcactatgacaggttgcttgcaacggtgacaataagaaaaaggtttattgtccatttctctta |
150 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||| || ||| |||||||||| ||||||||||| ||||||||||||||| ||||||||| |
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| T |
25889796 |
caatgaaaagccttctgcttatgaacagttgttgtgttcactgtggtcggtcgcttgcaacgatgacaataagataaaggtttattgtccctttctctta |
25889697 |
T |
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| Q |
151 |
ttctctataaacaatgcatttgatgctattttatgattattttgtctgtta |
201 |
Q |
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||||||||||||| |||||||| | |||||||||||||||||||||||||| |
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| T |
25889696 |
ttctctataaacattgcatttggtactattttatgattattttgtctgtta |
25889646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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