View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18724_low_3 (Length: 576)

Name: NF18724_low_3
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18724_low_3
NF18724_low_3
[»] chr6 (13 HSPs)
chr6 (308-460)||(16654916-16655068)
chr6 (332-464)||(16871242-16871374)
chr6 (1-193)||(16871595-16871784)
chr6 (110-297)||(16654595-16654761)
chr6 (48-173)||(16770171-16770295)
chr6 (220-295)||(16734540-16734615)
chr6 (228-293)||(16770089-16770154)
chr6 (218-297)||(16871504-16871591)
chr6 (462-516)||(16655112-16655166)
chr6 (43-104)||(16772140-16772204)
chr6 (228-277)||(16772279-16772328)
chr6 (40-105)||(16784052-16784117)
chr6 (486-518)||(16871198-16871230)
[»] scaffold0144 (3 HSPs)
scaffold0144 (220-297)||(4758-4835)
scaffold0144 (111-182)||(4852-4923)
scaffold0144 (220-283)||(6850-6913)
[»] scaffold0133 (1 HSPs)
scaffold0133 (220-297)||(15284-15361)


Alignment Details
Target: chr6 (Bit Score: 133; Significance: 7e-69; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 308 - 460
Target Start/End: Original strand, 16654916 - 16655068
Alignment:
Q  308 tcattccttccaacgagtgagtaagttgttgtgaagaacatccagatgatgaagattgagaaagatgtccatgagtctacaatttcttctgctacatcaa 407  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16654916 tcattccttccaatgagtgagtaagatgttgtgaagaacatccagatgatgaagcttgagaaagatgtccatgagtctacaatttcttctgctacatcaa 16655015  T
Q  408 aataattggatttaggtacaaatcactaacttcctattaattaaacaactttt 460  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  16655016 aataattggatttaggtacaaatcactaacttccatttaattaaacaactttt 16655068  T

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Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 332 - 464
Target Start/End: Complemental strand, 16871374 - 16871242
Alignment:
Q  332 gttgttgtgaagaacatccagatgatgaagattgagaaagatgtccatgagtctacaatttcttctgctacatcaaaataattggatttaggtacaaatc 431  Q
    |||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16871374 gttgttttgaagaacatccagatgatgatgcttgagaaagatgtccatgagtctacaatttcttctgctacatcaaaataattggatttaggtacaaatc 16871275  T
Q  432 actaacttcctattaattaaacaacttttacta 464  Q
    ||||||||||||||||||| | |||||| ||||    
T  16871274 actaacttcctattaattatagaactttaacta 16871242  T

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Target: chr6; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 16871784 - 16871595
Alignment:
Q  1 ttatagatgtgtaaat-ggctaatcaatattagtataatgcatagtacataagttgagatgattagtgcagaatcatgtacaaacctgcttgcgtatgct 99  Q
    |||||||||||||||| ||  |||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||  | ||| ||     
T  16871784 ttatagatgtgtaaattggagaatcaatattagtataatacatagtacataagttgagatggttagtgcagaattatgtacaaacctgcaggtgtacgcg 16871685  T
Q  100 tgggggcaagcaaatatctttgctactgcaaattgaaaaattcactgaataacaacgattttattgatgaaactgtaaagaaattggtctcaaa 193  Q
    | |||| ||    ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  16871684 ttggggaaa----atacctttgctactacaaattgataaattcactgaataacaacgattttattgatgaaactctaaagaaaatggtctcaaa 16871595  T

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Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 110 - 297
Target Start/End: Original strand, 16654595 - 16654761
Alignment:
Q  110 caaatatctttgctactgcaaattgaaaaattcactgaataacaacgattttattgatgaaactgtaaagaaattggtctcaaagaaaacagacacggtt 209  Q
    ||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||| ||||||||||||||||||           ||||      
T  16654595 caaatatctttgctactacaaattgataagttcactgaataacaatgattttattgatgaaactctaaagaaattggtctcaa-----------acgg-- 16654681  T
Q  210 gcatacaaacattgaatacaaacatttacactgttgcataattgaaatattacaaagaaaacagacacggtttcactaagtttcgaga 297  Q
            ||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  16654682 --------acaatgaatacaaacatttacactgctgcataattgaaatattacatagaaaacagacatggtttcactaagtttcgaga 16654761  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 16770295 - 16770171
Alignment:
Q  48 ataagttgagatgattagtgcagaatcatgtacaa---acctgcttgcgtatgcttgggggcaagcaaatatctttgctactgcaaattgaaaaattcac 144  Q
    ||||||||||||| |||||||||||||||| ||||   ||||||||||||| || | | |  ||  |||||||||||||| |  ||||||| ||||||||    
T  16770295 ataagttgagatgcttagtgcagaatcatgcacaacaaacctgcttgcgtacgcgtagag--aa--aaatatctttgctagtagaaattgataaattcac 16770200  T
Q  145 tgaataacaacgattttattgatgaaact 173  Q
     ||||||||||||||||||||||||||||    
T  16770199 cgaataacaacgattttattgatgaaact 16770171  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 16734540 - 16734615
Alignment:
Q  220 attgaatacaaacatttacactgttgcataattgaaatattacaaagaaaacagacacggtttcactaagtttcga 295  Q
    ||||||||||||||||||||||| || | |||| ||||||| || ||||||||||||| |||||||||||||||||    
T  16734540 attgaatacaaacatttacactgctgtagaattaaaatatttcatagaaaacagacacagtttcactaagtttcga 16734615  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 16770154 - 16770089
Alignment:
Q  228 caaacatttacactgttgcataattgaaatattacaaagaaaacagacacggtttcactaagtttc 293  Q
    ||||||||||||||| |||| |||| ||||||| || ||||||||||||| ||||||| |||||||    
T  16770154 caaacatttacactgctgcagaattaaaatatttcatagaaaacagacacagtttcacaaagtttc 16770089  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 16871591 - 16871504
Alignment:
Q  218 acattgaatacaaacatttacact-----gttgcataattgaaatattacaaagaaaacagacacgg---tttcactaagtttcgaga 297  Q
    ||||||||||||| ||||||||||     | |||||||||||||||||||||||||||||||||| |   | ||||||||||||||||    
T  16871591 acattgaatacaagcatttacactgctgcgctgcataattgaaatattacaaagaaaacagacacagtactgtcactaagtttcgaga 16871504  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 516
Target Start/End: Original strand, 16655112 - 16655166
Alignment:
Q  462 ctagcttcctatatgtagtcacaaattaataaatgcaatgtctcttactataaaa 516  Q
    |||||||||||||||||||||||  ||| ||||||||| ||||||||||| ||||    
T  16655112 ctagcttcctatatgtagtcacactttagtaaatgcaacgtctcttactaaaaaa 16655166  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 16772140 - 16772204
Alignment:
Q  43 agtacataagttgagatgattagtgcagaatcatgt---acaaacctgcttgcgtatgcttgggg 104  Q
    |||| |||||| |||||| | |||||||||||||||   |||||||||||||||||||| |||||    
T  16772140 agtatataagtggagatgctgagtgcagaatcatgtacaacaaacctgcttgcgtatgcgtgggg 16772204  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 16772279 - 16772328
Alignment:
Q  228 caaacatttacactgttgcataattgaaatattacaaagaaaacagacac 277  Q
    ||||||||||||||| |||| |||| ||||||| || |||||||||||||    
T  16772279 caaacatttacactgctgcagaattaaaatatttcatagaaaacagacac 16772328  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 16784052 - 16784117
Alignment:
Q  40 catagtacataagttgagatgattagtgcagaatcatgtacaaacctgcttgcgtatgcttggggg 105  Q
    ||||||| | || |||||| | ||| |||||||||||||||||||||| ||||||| || ||||||    
T  16784052 catagtataaaaattgagacggttattgcagaatcatgtacaaacctgtttgcgtaggcgtggggg 16784117  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 518
Target Start/End: Complemental strand, 16871230 - 16871198
Alignment:
Q  486 attaataaatgcaatgtctcttactataaaata 518  Q
    ||||||||||||| |||||||||||||||||||    
T  16871230 attaataaatgcattgtctcttactataaaata 16871198  T

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Target: scaffold0144 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 4835 - 4758
Alignment:
Q  220 attgaatacaaacatttacactgttgcataattgaaatattacaaagaaaacagacacggtttcactaagtttcgaga 297  Q
    ||||||||||||||||||||||| |||| |||| ||||||| || ||||||||||| | |||||||||||||||||||    
T  4835 attgaatacaaacatttacactgctgcagaattaaaatatttcatagaaaacagacgcagtttcactaagtttcgaga 4758  T

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Target: scaffold0144; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 4923 - 4852
Alignment:
Q  111 aaatatctttgctactgcaaattgaaaaattcactgaataacaacgattttattgatgaaactgtaaagaaa 182  Q
    |||||||||||||  | |||||||| ||||||||||||||| |||||||||||||||||||||  |||||||    
T  4923 aaatatctttgctggtacaaattgataaattcactgaataataacgattttattgatgaaactcaaaagaaa 4852  T

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Target: scaffold0144; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 6850 - 6913
Alignment:
Q  220 attgaatacaaacatttacactgttgcataattgaaatattacaaagaaaacagacacggtttc 283  Q
    ||||||||||||||||||||||| || | |||| ||||||| || ||||||||||||| |||||    
T  6850 attgaatacaaacatttacactgctgtagaattaaaatatttcatagaaaacagacacagtttc 6913  T

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Target: scaffold0133 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 15284 - 15361
Alignment:
Q  220 attgaatacaaacatttacactgttgcataattgaaatattacaaagaaaacagacacggtttcactaagtttcgaga 297  Q
    ||||||||||||||||||||||| || | |||| ||||||| || ||||||||||||| |||||||||||||||||||    
T  15284 attgaatacaaacatttacactgctgtagaattaaaatatttcatagaaaacagacacagtttcactaagtttcgaga 15361  T

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