View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18724_low_4 (Length: 507)
Name: NF18724_low_4
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18724_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 13 - 491
Target Start/End: Complemental strand, 25277539 - 25277061
Alignment:
| Q |
13 |
aaaatattagaaggcttaaagtttaaacaactttcaaatgaaaacactttcacttcaaacattgttaaaactatttcaacacttgaacatatttccatgg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
25277539 |
aaaatattagaaggcttaaagtttaaacaactttcaaatggaaacactttcacttcaaacattgttaaaactattttaacacctgaacatatttccatgg |
25277440 |
T |
|
| Q |
113 |
ctacaacacaaccaaccaaagtcaatagcgttgataagatgcttacacctacctttccctttgtcaagtagtcattgtatattcgagataataaaagtcg |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25277439 |
ctacaacacaaccaaccaaactcaatagcgttgataagatgcttacacctacctttccctttgtcaagtagccattgtatattcgagataataaaagtcg |
25277340 |
T |
|
| Q |
213 |
gcataaaagaaatggtaacacttcttctagcagggttaacatttcagatggtgtgaacaatgacaataatatgttcctaaatggaaactatcaatattgt |
312 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25277339 |
gaaaaaaagaaatggtaacacttcttctagcagggttaacatttcatatggtgtgaacaatgacaataatatgttcctaaatggaaactatcaatattgt |
25277240 |
T |
|
| Q |
313 |
gcaactgctcttatgcaaatatctgtttatgaaaatgttgaaaaaggagaaaatcctacagagtctgacatctctgatgcaaatggaaccatgatcaata |
412 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
25277239 |
gcagctgctcctatgcaaatatctgtttatgaaaatgttgaaaaaggaaaaaattctactgagtctgatatctctgatgcaaatggaactatgatcaata |
25277140 |
T |
|
| Q |
413 |
atggtatattaaatgaaaatatggtttctaaacttgacaaggtgtataacaccattacacaaaggaacttatttgtttc |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25277139 |
atggtatattaaatgaaaatatggtttctaaacttgacaaggtgtataacaccattacacaaaggaacttatttgtttc |
25277061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 318 - 491
Target Start/End: Original strand, 25274726 - 25274901
Alignment:
| Q |
318 |
tgctcttatgcaaatatctgtttatgaaaatgttg-aaaaaggagaaaatcctacagagtctgacatctctgatgcaaatggaaccatgatcaataatgg |
416 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| ||||||| ||||||||| | |||||| |||||| ||||||| |||||||||| ||| ||||| |
|
|
| T |
25274726 |
tgctcttatgcacatatctatttatgaaaatgttataaaaagggaaaaatcctattgggtctgaaatctctcatgcaaacggaaccatgaccaacaatgg |
25274825 |
T |
|
| Q |
417 |
tatattaaatgaaaatatggtttctaaacttgacaaggtgtataaca-ccattacacaaaggaacttatttgtttc |
491 |
Q |
| |
|
||||||| ||| |||||||||||| |||||| |||| |||||||||| | || | |||||||||||| | |||||| |
|
|
| T |
25274826 |
tatattacatggaaatatggtttccaaactttacaatgtgtataacatcaataagacaaaggaacttttctgtttc |
25274901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 25262094 - 25262230
Alignment:
| Q |
102 |
tatttccatggctacaacacaaccaaccaaagtcaatagcgttgataagatgcttacacctacctttccctttgtcaagtagtcattgtatattcgagat |
201 |
Q |
| |
|
|||| |||| |||||||||||| |||||||| ||||||| ||||||||| || |||| ||||||||||||||| |||| | ||||| | ||||| |||| |
|
|
| T |
25262094 |
tattcccatagctacaacacaatcaaccaaactcaatagtgttgataagttgtttactcctacctttccctttatcaataaatcattatttattcaagat |
25262193 |
T |
|
| Q |
202 |
aataaaagtcggcataaaagaaatggtaacacttctt |
238 |
Q |
| |
|
||||| |||| ||| |||||||||||||||| ||||| |
|
|
| T |
25262194 |
aataagagtcagcaaaaaagaaatggtaacaattctt |
25262230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 25300390 - 25300263
Alignment:
| Q |
13 |
aaaatattagaaggcttaaagtttaaacaactttcaaatgaaaacactttcacttcaaacattgttaaaactatttcaacacttgaacatatttccatgg |
112 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||| ||| ||||| |||||||||||||||||| |||| |||| | ||| |||||||| || |
|
|
| T |
25300390 |
aaaaaattagaaggcttaaagtttcaacaactttcaaatggaaatactttaacttcaaacattgttaaagatattccaacctctcaacttatttccaagg |
25300291 |
T |
|
| Q |
113 |
ctacaacacaaccaaccaaagtcaatagc |
141 |
Q |
| |
|
||| ||| ||||||||| || |||||||| |
|
|
| T |
25300290 |
ctataac-caaccaacccaactcaatagc |
25300263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University