View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18724_low_6 (Length: 433)
Name: NF18724_low_6
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18724_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 37686453 - 37686028
Alignment:
| Q |
1 |
ttcatcacccgaaatatacctccacaactaggatatatgaaatgaagtcatttattaaatgttttatgcacactattaaaatactactatagataaaatt |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37686453 |
ttcatcacccgaaagatacctccacaactaggatatatgaaatgaagtcatttattaaatgttttatgcacactattaaaatactactatagataaaatt |
37686354 |
T |
|
| Q |
101 |
gtaaacatttaagagatatgcattgtcagtgtacaacaattttacacttatattcaatcaaaattcactagattgccatatcac----------tgggag |
190 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
37686353 |
gtaaacatttaagagatatgcattgtcagtgtacaacaattttacactgatattcaatcaaaattcactagattgccatatcatctcaattttatgggag |
37686254 |
T |
|
| Q |
191 |
cccctattatggacctcnnnnnnnagagtccatccattatccttagtaattgaccgactatagcagatttattttgttcctttccaatttaaatagtata |
290 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||| ||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37686253 |
cccctattatagacctctttttttagagtccacccattgtccatagtaattgatcggctatagcagatttattttgttcctttccaatttaaatagtata |
37686154 |
T |
|
| Q |
291 |
tatcacttttacattttctcgcctctatttcttcattccataactttatttcatactgtacctacttcttcacttcattcctttcatgtaaatctttatg |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37686153 |
tatcacttttacattttctcgcctctatttcttcattccataactttatttcatactgtacctacttcttcacttcattcctttcatgtaaatctttatg |
37686054 |
T |
|
| Q |
391 |
aggagcagtgatgggacacaatcttg |
416 |
Q |
| |
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|||||||||| |||||||| |||||| |
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| T |
37686053 |
aggagcagtggtgggacacgatcttg |
37686028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 186 - 416
Target Start/End: Complemental strand, 5801461 - 5801231
Alignment:
| Q |
186 |
gggagcccctattatggacctcnnnnnnnagagtccatccattatccttagtaattgaccgactatagcagatttattttgttcctttccaatttaaata |
285 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
5801461 |
gggagcccctattatggacctctttttttagagtccacccatggtccttagtaattgaccggctatagcaagtttattttgttcctttccaatttaaata |
5801362 |
T |
|
| Q |
286 |
gtatatatcacttttacattttctcgcctctatttcttcattccataactttatttcatactgtacctacttcttcacttcattcctttcatgtaaatct |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5801361 |
gtatatatcacttttacattttctcgcctctatttcttcattccataacttcatttcatactgtacctacttcttcacttcattcctttcatgtaaatct |
5801262 |
T |
|
| Q |
386 |
ttatgaggagcagtgatgggacacaatcttg |
416 |
Q |
| |
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||||||||||||||| |||||||| |||||| |
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| T |
5801261 |
ttatgaggagcagtggtgggacacgatcttg |
5801231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 215 - 410
Target Start/End: Complemental strand, 30866594 - 30866399
Alignment:
| Q |
215 |
agagtccatccattatccttagtaattgaccgactatagcagatttattttgttcctttccaatttaaatagtatatatcacttttacattttctcgcct |
314 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30866594 |
agagtccatccatggtccttagtaattgaccggctatagcaggtttattttgttcctttccaatttaaatagtatatatcacctttacattttctcgcct |
30866495 |
T |
|
| Q |
315 |
ctatttcttcattccataactttatttcatactgtacctacttcttcacttcattcctttcatgtaaatctttatgaggagcagtgatgggacaca |
410 |
Q |
| |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
30866494 |
ctatttcttcattccataacttcatttcatattgtacctacttcttcacttcattcctttcatgtaaatctttatgaggggcagtggtgggacaca |
30866399 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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