View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18724_low_8 (Length: 409)

Name: NF18724_low_8
Description: NF18724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18724_low_8
NF18724_low_8
[»] chr8 (2 HSPs)
chr8 (10-391)||(27223714-27224095)
chr8 (10-391)||(27227905-27228286)
[»] chr1 (9 HSPs)
chr1 (71-391)||(11547030-11547350)
chr1 (41-391)||(48652889-48653239)
chr1 (71-391)||(48618216-48618536)
chr1 (129-243)||(48639754-48639868)
chr1 (129-368)||(48661406-48661648)
chr1 (126-368)||(48666998-48667243)
chr1 (64-365)||(48628658-48628959)
chr1 (41-254)||(48656337-48656550)
chr1 (126-243)||(48585178-48585295)
[»] chr3 (1 HSPs)
chr3 (41-386)||(19665577-19665922)


Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 10 - 391
Target Start/End: Original strand, 27223714 - 27224095
Alignment:
Q  10 caaaggagatgtaaaccacagatgatggtgactttgagttcaaccactctataatacactcatcatcactcttaacaaaatcaccacagatattacttgc 109  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27223714 caaaggagatgtaaaccacagatgatggtggctttgagttcaaccactctatgatacactcatcatcactcttaacaaaatcaccacagatattacttgc 27223813  T
Q  110 atttttaatttgtgggtttttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27223814 atttttaatttgtgggtttttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatac 27223913  T
Q  210 gtatcaaccaatacacaaaacactttagacaagttgttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttgaacaaaatctg 309  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27223914 gtatcaaccaatacacaaaacactttagacaagttcttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttgaacaaaatccg 27224013  T
Q  310 ggatctcgttgtacttaagaactactgaagacaattgaacatcaatataaggttcttcaaccgaagggaaacgtaccagttt 391  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27224014 ggatctcattgtacttaagaactacagaagacaattgaacatcaatatatggttcttcaaccgaagggaaacgtaccagttt 27224095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 10 - 391
Target Start/End: Original strand, 27227905 - 27228286
Alignment:
Q  10 caaaggagatgtaaaccacagatgatggtgactttgagttcaaccactctataatacactcatcatcactcttaacaaaatcaccacagatattacttgc 109  Q
    |||| |||||||| |||||||||||| ||| | ||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  27227905 caaatgagatgtataccacagatgattgtggccttgagtttaaccactctataatacaatcatcatcactcttaactaaatcaccacagatattacttgc 27228004  T
Q  110 atttttaatttgtgggtttttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatac 209  Q
    | ||||  ||| |||||||| ||| ||||||||||| |||||||||  ||| |||| ||| |||| ||| |  |||||||||||||| | |||||||||     
T  27228005 agtttttgtttttgggttttgaaataaaggaccaatgggtcttattaagacagaatattttgaaatataatttatgaaatcatgttccaattcctcatag 27228104  T
Q  210 gtatcaaccaatacacaaaacactttagacaagttgttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttgaacaaaatctg 309  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||||| || || || |||||||| || | |  |||||||||  ||||  |||||||    
T  27228105 gtatccaccaatacacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaaatggatacttactaaaacaatgaaggaaatctg 27228204  T
Q  310 ggatctcgttgtacttaagaactactgaagacaattgaacatcaatataaggttcttcaaccgaagggaaacgtaccagttt 391  Q
    | || || ||||| ||||| ||||  |||||||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  27228205 gtatttcattgtatttaaggactagagaagacaattgaacatcaatataaggttctgcattcgaagggaaacgtaccagttt 27228286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 71 - 391
Target Start/End: Original strand, 11547030 - 11547350
Alignment:
Q  71 atcatcactcttaacaaaatcaccacagatattacttgcatttttaatttgtgggtttttaaacaaaggaccaataggtcttattttgactgaattttta 170  Q
    ||||||||||||||||||||| ||||  ||||||||||||  |||||| | ||| ||||||||||| ||||||||||||||||| | ||  || |||||     
T  11547030 atcatcactcttaacaaaatctccacgaatattacttgcacctttaatatttggatttttaaacaatggaccaataggtcttatgtggatggattttttt 11547129  T
Q  171 gaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaaacactttagacaagttgttaatttgttccattatgattgtcc 270  Q
    | || |||||| |||||||||||||||||||| ||||| || || || || ||||||||||||||||| || || ||||  ||||| |  |||| |||||    
T  11547130 gtaatatagtcaatgaaatcatgttctagttcttcataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtcc 11547229  T
Q  271 caagaattgaaaatgtactaaaaccttgaacaaaatctgggatctcgttgtacttaagaactactgaagacaattgaacatcaatataaggttcttcaac 370  Q
    | |||| || | ||| |||||||   |||| |||||||||||| || ||||| ||||| |||    |||  |||||||||||||||||||||||||   |    
T  11547230 ctagaaatggatatggactaaaaggatgaagaaaatctgggatttcattgtatttaaggacttgaaaaggtaattgaacatcaatataaggttctttttc 11547329  T
Q  371 cgaagggaaacgtaccagttt 391  Q
    | |||| ||| ||||||||||    
T  11547330 caaaggaaaatgtaccagttt 11547350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 41 - 391
Target Start/End: Original strand, 48652889 - 48653239
Alignment:
Q  41 ctttgagttcaaccactctataatacactcatcatcactcttaacaaaatcaccacagatattacttgcatttttaatttgtgggtttttaaacaaagga 140  Q
    ||||||||| | |||||||||||||     |||||||||||||||||||||||||| ||||||  |||||  |||||| | || ||| |||||||| |||    
T  48652889 ctttgagtttagccactctataatattacaatcatcactcttaacaaaatcaccacggatattgtttgcacctttaatgtttgagttgttaaacaatgga 48652988  T
Q  141 ccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaaacactttagaca 240  Q
    ||||| ||||||||   || ||| || || |||| |||||| ||||||||||| |||||||| ||||| || || || || |||||||| |||||||| |    
T  48652989 ccaatgggtcttatgaggattgatttgtttgaaatatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagata 48653088  T
Q  241 agttgttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttgaacaaaatctgggatctcgttgtacttaagaactactgaaga 340  Q
    | || ||||||||||| |  | || ||||||||    |  |||||||||||||   || | |||||||||||| || || |  |||||||||||  |||     
T  48653089 aattcttaatttgttctaagacgagtgtcccaaatgatagaaatgtactaaaaggatgcagaaaatctgggatttcattatgtttaagaactacaaaagg 48653188  T
Q  341 caattgaacatcaatataaggttcttcaaccgaagggaaacgtaccagttt 391  Q
     |||||||||||||||||||||||||||   ||||||||||||||||||||    
T  48653189 taattgaacatcaatataaggttcttcatttgaagggaaacgtaccagttt 48653239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 71 - 391
Target Start/End: Complemental strand, 48618536 - 48618216
Alignment:
Q  71 atcatcactcttaacaaaatcaccacagatattacttgcatttttaatttgtgggtttttaaacaaaggaccaataggtcttattttgactgaattttta 170  Q
    ||||||||||||||||||||| ||||  |||||  |||||  |||||| | ||| || | |||||| |||||||| |||||||     | ||  |||||     
T  48618536 atcatcactcttaacaaaatctccacgaatattttttgcacctttaatatttggattgtgaaacaatggaccaatgggtcttacgaaaattgtttttttt 48618437  T
Q  171 gaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaaacactttagacaagttgttaatttgttccattatgattgtcc 270  Q
    |||| |||||| ||||||||||| |||||||| ||||| || || || || |||||||| ||||||||||| || ||||  ||||| |  |||| |||||    
T  48618436 gaaatatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagacaaattcttaaactgttctaagatgagtgtcc 48618337  T
Q  271 caagaattgaaaatgtactaaaaccttgaacaaaatctgggatctcgttgtacttaagaactactgaagacaattgaacatcaatataaggttcttcaac 370  Q
    | |||| || ||||  |||||||   |||| |||||||||||| || ||||| |||||||||    |||  ||||||||||||||||||||||||         
T  48618336 ctagaaatggaaattgactaaaaggatgaagaaaatctgggatttcattgtatttaagaacttgaaaaggtaattgaacatcaatataaggttctgtttg 48618237  T
Q  371 cgaagggaaacgtaccagttt 391  Q
     ||||||||||||||||||||    
T  48618236 tgaagggaaacgtaccagttt 48618216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 129 - 243
Target Start/End: Original strand, 48639754 - 48639868
Alignment:
Q  129 ttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaa 228  Q
    |||||| |||||||||||||||||||  ||| ||| ||||| |||| ||| || ||||||||||| |||||||| ||||| ||||| || ||||||||||    
T  48639754 ttaaacgaaggaccaataggtcttatggtgattgatttttttgaaatataatctatgaaatcatgctctagttcttcataggtatccactaatacacaaa 48639853  T
Q  229 acactttagacaagt 243  Q
    |||||||||||||||    
T  48639854 acactttagacaagt 48639868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 368
Target Start/End: Original strand, 48661406 - 48661648
Alignment:
Q  129 ttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaa 228  Q
    |||||||||||||||| | |||||||  ||| ||| ||||| |||| ||| |||||||||||||| |||| ||| ||| | ||||| || ||||||||||    
T  48661406 ttaaacaaaggaccaacatgtcttatggtgattgatttttttgaaatataatcgatgaaatcatgctctaattcttcaaaggtatccactaatacacaaa 48661505  T
Q  229 acactttagacaagttgttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttgaacaaaatctgggatctcgttgtacttaag 328  Q
    |||||||||||| ||  || |||||| || |  | | |||||| ||||||| ||||| | |||||   || | | |||||||||| |||||||| |||||    
T  48661506 acactttagacatgtcctttatttgtgccgtggtaagtgtccctagaattggaaatggattaaaaggatgtatataatctgggatttcgttgtatttaag 48661605  T
Q  329 aactactgaaga---caattgaacatcaatataaggttcttca 368  Q
    |||||  |||||    | |||||||||||| ||||||||||||    
T  48661606 aactatagaagagttgagttgaacatcaatgtaaggttcttca 48661648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 368
Target Start/End: Original strand, 48666998 - 48667243
Alignment:
Q  126 tttttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacac 225  Q
    |||||||||||||||||||  ||||||||   || ||| ||||  |||| ||| |||||||||||||| |||| ||| ||| | ||||| || |||||||    
T  48666998 tttttaaacaaaggaccaacgggtcttatggcgattgatttttccgaaatataatcgatgaaatcatgctctaattcttcaaaggtatccactaatacac 48667097  T
Q  226 aaaacactttagacaagttgttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttgaacaaaatctgggatctcgttgtactt 325  Q
    ||||||||||||||| ||  || || ||| || |  ||| |||||| ||||||| | || ||| ||||   || | |||||||||||| || ||||| ||    
T  48667098 aaaacactttagacatgtcctttatctgtgccgtggtgagtgtccctagaattggatatctacaaaaaggatgtataaaatctgggatttcattgtattt 48667197  T
Q  326 aagaactactgaaga---caattgaacatcaatataaggttcttca 368  Q
    ||||||||  |||||    | |||||||||||||||||||||||||    
T  48667198 aagaactatagaagagttgagttgaacatcaatataaggttcttca 48667243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 365
Target Start/End: Original strand, 48628658 - 48628959
Alignment:
Q  64 tacactcatcatcactcttaacaaaatcaccacagatattacttgcatttttaatttgtgggtttttaaacaaaggaccaataggtcttattttgactga 163  Q
    |||| |||||||| ||||||||||||||||| |  ||||| |||||   ||| |||  |||||| || |||| ||||||||| ||||| ||   ||||||    
T  48628658 tacaatcatcatcgctcttaacaaaatcacctcgaatattgcttgctgcttttattgttgggttcttgaacagaggaccaatgggtctaatgaggactga 48628757  T
Q  164 atttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaaacactttagacaagttgttaatttgttccattatg 263  Q
     ||||| |||| ||| |||||||||||||| |||||||| ||||| |||||  | ||||||||||| | ||| |||||||| || || |||  | | |||    
T  48628758 ttttttggaaagataatcgatgaaatcatgctctagttcttcataggtatccgctaatacacaaaatattttggacaagttattcatatgtgacgtgatg 48628857  T
Q  264 attgtcccaagaattgaaaatgtactaaaaccttgaacaaaatctgggatctcgttgtacttaagaactactgaagacaattgaacatcaatataaggtt 363  Q
    | |||||| ||||||| | | | | |||||   ||    ||||||||||| || ||||| ||||| ||||   ||| ||| |||||||||||||||||||    
T  48628858 agtgtccctagaattggatagggattaaaaggatgtgttaaatctgggatttcattgtatttaaggactataaaaggcaaatgaacatcaatataaggtt 48628957  T
Q  364 ct 365  Q
    ||    
T  48628958 ct 48628959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 254
Target Start/End: Original strand, 48656337 - 48656550
Alignment:
Q  41 ctttgagttcaaccactctataatacactcatcatcactcttaacaaaatcaccacagatattacttgcatttttaatttgtgggtttttaaacaaagga 140  Q
    ||||||||| | |||||||||||||     ||||||| ||||||||||||||| ||  ||||||||||||  | | || | |||||| || ||||  |||    
T  48656337 ctttgagtttagccactctataatagtagaatcatcagtcttaacaaaatcacgacgaatattacttgcacctattatgtttgggttgttgaacaccgga 48656436  T
Q  141 ccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaaacactttagaca 240  Q
    ||||| ||||||||  ||| ||| ||||  |||| ||| ||||| |||||| | |||||||| ||||| ||||| || |||||||| ||  |||||||||    
T  48656437 ccaattggtcttatgatgattgacttttccgaaatataatcgataaaatcaggctctagttcttcataggtatccacaaatacacacaatgctttagaca 48656536  T
Q  241 agttgttaatttgt 254  Q
    | || |||||||||    
T  48656537 aattcttaatttgt 48656550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 48585178 - 48585295
Alignment:
Q  126 tttttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacac 225  Q
    ||||||||  ||||||||| || ||||||   || ||| ||||| |||| ||| || ||||| ||||| |||||||| ||||| ||||| || |||||||    
T  48585178 tttttaaatgaaggaccaacagttcttatggggattgattttttcgaaatataatctatgaattcatgctctagttcttcataggtatccactaatacac 48585277  T
Q  226 aaaacactttagacaagt 243  Q
    ||||||||||||| ||||    
T  48585278 aaaacactttagataagt 48585295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 41 - 386
Target Start/End: Complemental strand, 19665922 - 19665577
Alignment:
Q  41 ctttgagttcaaccactctataatacactcatcatcactcttaacaaaatcaccacagatattacttgcatttttaatttgtgggtttttaaacaaagga 140  Q
    ||||||||| | |||||||||||||     |||||||||||||||||||||||| |  |||| ||| |||  |||||| | ||| || |||||||| |||    
T  19665922 ctttgagtttagccactctataatattacaatcatcactcttaacaaaatcaccgcgaatatcactcgcacatttaatctttggattattaaacaatgga 19665823  T
Q  141 ccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaaacactttagaca 240  Q
    || || || ||| |   || ||| ||||| |||| |||||||||| ||||||| |||||||| |||||  |||| ||||||||||||||||||||||| |    
T  19665822 ccgattggccttgtaaggattgattttttcgaaatatagtcgatgtaatcatgctctagttcatcataactatccaccaatacacaaaacactttagata 19665723  T
Q  241 agttgttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttgaacaaaatctgggatctcgttgtacttaagaactactgaaga 340  Q
    | || ||||  ||||| |  |||| |||||| |||| |||| || ||||||||   || | |||||| || || ||||| |  |||||| ||||  |||     
T  19665722 aattcttaaactgttctaaaatgagtgtccctagaaatgaatatttactaaaaggatgtagaaaatccggtatttcgttatgtttaagagctacgaaagg 19665623  T
Q  341 caattgaacatcaatataaggttcttcaaccgaagggaaacgtacc 386  Q
     |||||| ||||||||||||||||||   |||||||||||||||||    
T  19665622 taattgagcatcaatataaggttctttttccgaagggaaacgtacc 19665577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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