View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18725_high_5 (Length: 340)
Name: NF18725_high_5
Description: NF18725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18725_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 5664542 - 5664229
Alignment:
| Q |
13 |
tttgtttgagttcaaacccaaaactaagaatgcaatagaggagttcaggtgtttaagagtttgatcctcttaaattcaagttaaactaatgtcccaaacc |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5664542 |
tttgtttgagttcaaacccaaaactaagaatgcaatagaggagttcaggtgtttaagagtttgatcctcttaaattcaagttaaactaatgtcccaaacc |
5664443 |
T |
|
| Q |
113 |
tatggcaaaaaagactcaatttcagatagagtacaagcccagtcaataaataaaaatggagacatgcagcctctgatgcttaacttgagtacaagtctag |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5664442 |
tatggcaaaaaagactcaatttcaaatagagtacaagcccggtcaataaataaaaatggagacatgcagcctctgatgcttaacttgagtacaagtctag |
5664343 |
T |
|
| Q |
213 |
gaagaaaaatgtaagcaagagtgagttcctaccaagattcttc-acaagagtgacaaggagactcacaaggaaaattactagagcaactaatgagcaaga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5664342 |
gaagaaaaatgtaagcaagagtgagttcctaacaagattcttcaacaaaagtgacaaggagactcgcaaggaaaattactagagcaactaatgagcaaga |
5664243 |
T |
|
| Q |
312 |
atgaccattattgg |
325 |
Q |
| |
|
|||||||||||||| |
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|
| T |
5664242 |
atgaccattattgg |
5664229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 5662934 - 5662765
Alignment:
| Q |
13 |
tttgtttgagttcaaacccaaaactaagaatgcaatagaggagttcaggtgtttaagagtttgatcctcttaaattcaagttaaactaatgtcccaaacc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
5662934 |
tttgtttgagttcaaacccaaaactaagaatgcaatagaggagttcatgtgtttaagagtttgatcctcttaaattcaagttaaactaatgtcgcaaacc |
5662835 |
T |
|
| Q |
113 |
tatggcaaaaaagactcaatttcagatagagtacaagcccagtcaataaataaaaatggagacatgcagc |
182 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
5662834 |
tatggcaaaaaatactcaatttcagatagagttcaagcccagtcaataaataaaaatggagacatgcagc |
5662765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 5047594 - 5047641
Alignment:
| Q |
15 |
tgtttgagttcaaacccaaaactaagaatgcaatagaggagttcaggt |
62 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
5047594 |
tgtttgagttcaaacccaaaacaaagaaggcaatagaggagttcaggt |
5047641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 5046823 - 5046870
Alignment:
| Q |
15 |
tgtttgagttcaaacccaaaactaagaatgcaatagaggagttcaggt |
62 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
5046823 |
tgtttgagttcaaacccaaaataaagaaggcaatagaggagttcaggt |
5046870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 24853726 - 24853936
Alignment:
| Q |
17 |
tttgagttcaaacccaaaactaagaatgcaatagaggagttcaggt-gtttaagagtttgatcctcttaaattcaagttaaactaatgtcccaaacctat |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| | |||| | | |||||||| || |||| |||||||||| ||||||||| |
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|
| T |
24853726 |
tttgagttcaaacccaaaactaagaaggcaatagaggagttcaggaagcttaacaacccaaccctcttaagtttaagtccaactaatgtcgcaaacctat |
24853825 |
T |
|
| Q |
116 |
ggcaaaaaagactcaatttcagatagagtacaagcccagtcaataaataaaaatggagacatgcagcctctgatgcttaacttgagtacaagtctaggaa |
215 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||| ||||||||||| ||||| |||||||| ||| ||| |
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|
| T |
24853826 |
tgcaaataagactcaagttcagatagagtacaagtccaggcaataaataaaaatggagacttgcgacctctgatgctcaacttaagtacaagcctatgaa |
24853925 |
T |
|
| Q |
216 |
gaaaaatgtaa |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
24853926 |
gaaaaatgtaa |
24853936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 6824754 - 6824540
Alignment:
| Q |
13 |
tttgtttgagttcaaacccaaaactaagaatgcaatagaggagttcaggt-gtttaagagtttgatcctcttaaattcaagttaaactaatgtcccaaac |
111 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||| || ||||||||||| ||||||| |||||||||| |||| |
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|
| T |
6824754 |
tttgtttgagttcaaacctaaaactaagaaggcaatagaggagttcaggtagcctaacaggccgatcctcttaagttcaagtccaactaatgtcaaaaac |
6824655 |
T |
|
| Q |
112 |
ctatggcaaaaaagactcaatttcagatagagtacaagcccagtcaataaataaaaatggagacatgcagcctctgatgcttaacttgagtacaagtcta |
211 |
Q |
| |
|
|||| || || || ||||| ||||||||||| ||||| |||| |||||||| ||||||||||| | | ||||||||| | ||||| |||||||| ||| |
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|
| T |
6824654 |
ctatagcgaataatgctcaaattcagatagagcacaagtccagacaataaattaaaatggagacctacgacctctgatgatcaacttcagtacaagccta |
6824555 |
T |
|
| Q |
212 |
ggaagaaaaatgtaa |
226 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6824554 |
ggaagaaaaatgtaa |
6824540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 12738577 - 12738791
Alignment:
| Q |
15 |
tgtttgagttcaaacccaaaactaagaatgcaatagaggagttcaggt-gtttaagagtttgatcctcttaaattcaagttaaactaatgtcccaaacct |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| || |||| | ||| || ||||||||||| |||| ||| |||||||||| ||||||| |
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|
| T |
12738577 |
tgttcgagttcaaacccaaaactaagaagaaaatagaggaatttaggttgcctaacagcccgatcctcttaagttcatgtttaactaatgtctcaaacct |
12738676 |
T |
|
| Q |
114 |
atggcaaaaaagactcaatttcagatagagtacaagcccagtcaataaataaaaatggagacatgcagcctctgatgcttaac--ttgagtacaagtcta |
211 |
Q |
| |
|
||||| || ||||||||| ||| ||||||| ||||| |||| |||||||| ||||||||||| ||| ||||||| ||| ||| |||||||||| || |
|
|
| T |
12738677 |
atggcgaataagactcaagttctgatagagcacaagtccaggcaataaatgaaaatggagacctgcgacctctgacgctcaactgttgagtacaatctta |
12738776 |
T |
|
| Q |
212 |
ggaagaaaaatgtaa |
226 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
12738777 |
gaaagaaaaatgtaa |
12738791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 314
Target Start/End: Original strand, 12738970 - 12739007
Alignment:
| Q |
277 |
acaaggaaaattactagagcaactaatgagcaagaatg |
314 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
12738970 |
acaaggaaaattactagagcaactaaggagaaagaatg |
12739007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 22056257 - 22056164
Alignment:
| Q |
133 |
ttcagatagagtacaagcccagtcaataaataaaaatggagacatgcagcctctgatgcttaacttgagtacaagtctaggaagaaaaatgtaa |
226 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||| |||||| ||| ||| ||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
22056257 |
ttcagatagagcacaagcccaggcaataaataaaaagggagacttgcgacctttgatgctcaacttgagtacaagcctaggaagaaaaatgtaa |
22056164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 22055986 - 22055949
Alignment:
| Q |
277 |
acaaggaaaattactagagcaactaatgagcaagaatg |
314 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
22055986 |
acaaggaaaattactagagaaactaaggagcaagaatg |
22055949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 37485612 - 37485468
Alignment:
| Q |
19 |
tgagttcaaacccaaaactaagaatgcaatagaggagttcaggtgtt-taagagtttgatcctcttaaattcaagttaaactaatgtcccaaacctatgg |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| || | | || | |||||||||| || |||| |||||||||| ||| |||| |
|
|
| T |
37485612 |
tgagttcaaacccaaaactaagaaggcaagagaggagttcaggtattatgatagcctaatcctcttaagtttaagtccaactaatgtcgtaaatatatga |
37485513 |
T |
|
| Q |
118 |
caaaaaagactcaatttcagatagagt-acaagcccagtcaataa |
161 |
Q |
| |
|
||| ||| ||||| |||| ||||||| |||||||||| |||||| |
|
|
| T |
37485512 |
taaataagcctcaacttcaaatagagtaacaagcccagacaataa |
37485468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 1275735 - 1275690
Alignment:
| Q |
17 |
tttgagttcaaacccaaaactaagaatgcaatagaggagttcaggt |
62 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
1275735 |
tttgagttcaaacccaaaactaagaaggaaatagaagagttcaggt |
1275690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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