View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18725_high_6 (Length: 307)
Name: NF18725_high_6
Description: NF18725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18725_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 50369803 - 50370085
Alignment:
| Q |
11 |
cagagagcaaaatcgcaggagtaacgccgctcgaatacgcaatgcaagttttaagaatacgagatacaatccaactccaaccataaccagatgtatccga |
110 |
Q |
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| T |
50369803 |
cagagagcaaaatcgcaggagtaacgccgctcgaatacgcaatacaagttttaagaatacgagatacaatccaactccaaccataaccagatgtatccga |
50369902 |
T |
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| Q |
111 |
atcaccacgatttgaatcgtcttctagcgacaatagctcggatcttgcttgatcgacgaaattgagaaaaggatcttcttcctctttctgttgttcttct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50369903 |
atcaccacgatttgaatcgtcttctagcgacaatagctcggatcttgcttgatcgacgaaattgagaaaaggatcttcttcctctttctgttgttcttct |
50370002 |
T |
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| Q |
211 |
acgtccatttgggtgtcttcaactatctctgtattcacttccattttcgattcagacgcgaatttgtgattgtgatgaatatg |
293 |
Q |
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| T |
50370003 |
acgtccatttgggtgtcttcaactatctctgtattcacttccattttcgattcagacgcgaatttgtgattgtgatgaatatg |
50370085 |
T |
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