View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18725_low_12 (Length: 265)
Name: NF18725_low_12
Description: NF18725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18725_low_12 |
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| [»] scaffold0373 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 16)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 4925884 - 4926118
Alignment:
| Q |
15 |
aatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcgaccagtaccgataaaagattttgctacacattcaac |
114 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4925884 |
aatagaagaaatggacaaaagtgaatctattaagcttctctgttggcatgcattcaattaatcgaccagtaccgatagaagattttgctacacattcaac |
4925983 |
T |
|
| Q |
115 |
aaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattttgctacactatgagatttgccatatacatatcttaaatgc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4925984 |
aaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattttgctacactatgagatttgccatatacatatcttaaatgc |
4926083 |
T |
|
| Q |
215 |
atgtttcaaagaaacatatgccaaaggtgcttttg |
249 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
4926084 |
atgtttcaaagaaacatatgccaaaggtgcttttg |
4926118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 6794666 - 6794821
Alignment:
| Q |
15 |
aatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcgaccagtaccgataaaagattttgctacacattcaac |
114 |
Q |
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||||||||||||||| || |||||||| ||||||||||| |||||||||||||| || | |||| || ||| || ||||||||| ||||||||| |
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| T |
6794666 |
aatagaagaaatggatgaaagtgaatctcttaagcttttcagttggcatgcattc----aagcaaccaagtccaatagaatattttgctaaacattcaac |
6794761 |
T |
|
| Q |
115 |
aaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattt |
174 |
Q |
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|
| T |
6794762 |
agatgtgattgcttactcagggagattgccactagcacttgaagtacttggttcctattt |
6794821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 174
Target Start/End: Original strand, 6649297 - 6649432
Alignment:
| Q |
35 |
gtgaatctattaagcttttctgttggcatgcattcaattaatcgaccagtaccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtg |
134 |
Q |
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|||||||| || |||||||| ||||||||||||||||| || ||| || | ||||||||||||||||||||||||| | ||| ||| ||| | || |
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| T |
6649297 |
gtgaatctcttgagcttttcagttggcatgcattcaatcaa----ccaagtcctacaaaagattttgctacacattcaacagatgtgattgcttattctg |
6649392 |
T |
|
| Q |
135 |
ggagattgccactagcagttaaagtacttgggtcctattt |
174 |
Q |
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|||||||||| |||||| || |||| ||||| |||||||| |
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| T |
6649393 |
ggagattgcctctagcacttcaagtccttggttcctattt |
6649432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 6813996 - 6814151
Alignment:
| Q |
15 |
aatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcgaccagtaccgataaaagattttgctacacattcaac |
114 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||||||| |||||||||||||| || | |||| |||||| |||||||||||| ||||| ||| |
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| T |
6813996 |
aatagaagaaatggatgaaagtgaatctcttaagcttttcagttggcatgcattc----aagcaaccaagtccgatagaagattttgctaaacatttaac |
6814091 |
T |
|
| Q |
115 |
aaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattt |
174 |
Q |
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| | ||| || ||| | |||| |||||||||||||| || |||| || ||||||||||| |
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| T |
6814092 |
agatgtgatttcttattctgggggattgccactagcacttgaagtcctcgggtcctattt |
6814151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 6535330 - 6535242
Alignment:
| Q |
86 |
ccgataaaagattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattt |
174 |
Q |
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|
|||||| |||||||||||||||||||||| | ||| ||| ||| | |||||||||||| |||||| || |||| |||||||||||||| |
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| T |
6535330 |
ccgatagaagattttgctacacattcaacggatgtgattgcttattctgggagattgcccctagcacttgaagtccttgggtcctattt |
6535242 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 6834466 - 6834545
Alignment:
| Q |
95 |
gattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattt |
174 |
Q |
| |
|
||||||||||||||||||||| | ||| ||| ||| | ||| ||||||||||||||| || |||| ||||| |||||||| |
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| T |
6834466 |
gattttgctacacattcaacagatgtgattgcttattctggaagattgccactagcacttgaagtccttggctcctattt |
6834545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 6589782 - 6589627
Alignment:
| Q |
15 |
aatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcgaccagtaccgataaaagattttgctacacattcaac |
114 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||| || |||||||||||||||| || ||| || | | ||||||||||||| |||||||| |
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| T |
6589782 |
aatagaagaaatggacaaaattgaatcacttaagctgtttagttggcatgcattcaaacaa----ccaagtccaaaagaagattttgctacgcattcaac |
6589687 |
T |
|
| Q |
115 |
aaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattt |
174 |
Q |
| |
|
| | ||| ||| ||| | |||| |||||||||||||| || |||| ||||| |||||||| |
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|
| T |
6589686 |
agatgtgattgcttattctgggggattgccactagcacttgaagtccttggatcctattt |
6589627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 6624096 - 6624019
Alignment:
| Q |
97 |
ttttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattt |
174 |
Q |
| |
|
||||||||||||||||||| | ||| ||| ||| | |||||||||||||||||| || |||| ||||||| |||||| |
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| T |
6624096 |
ttttgctacacattcaacagatgtgattgcttattccgggagattgccactagcacttgaagttcttgggtgctattt |
6624019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 6726152 - 6726307
Alignment:
| Q |
15 |
aatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcgaccagtaccgataaaagattttgctacacattcaac |
114 |
Q |
| |
|
||||||||||||||| || |||||||| | ||||||||| |||||||||||||||| ||| | ||| || | | |||||||||||| ||||||||| |
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| T |
6726152 |
aatagaagaaatggatgaaagtgaatctctcaagcttttcagttggcatgcattcaagcaat---caagt-ccaaaagaagattttgctaaacattcaac |
6726247 |
T |
|
| Q |
115 |
aaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattt |
174 |
Q |
| |
|
| | ||| ||| || | |||| |||||||||||||| || |||| ||||||| ||||| |
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|
| T |
6726248 |
agatgtgattgcatattctgggggattgccactagcacttgaagtcattgggtcatattt |
6726307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 8413042 - 8413098
Alignment:
| Q |
15 |
aatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaa |
71 |
Q |
| |
|
|||| ||||||||||| || |||||||| | ||||||||| |||||||||||||||| |
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|
| T |
8413042 |
aataaaagaaatggacgaaagtgaatctctcaagcttttcagttggcatgcattcaa |
8413098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 6834395 - 6834446
Alignment:
| Q |
20 |
aagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaa |
71 |
Q |
| |
|
||||||||||| || |||||||| || |||||||| |||||||||||||||| |
|
|
| T |
6834395 |
aagaaatggacgaaagtgaatctcttgagcttttcagttggcatgcattcaa |
6834446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 6500019 - 6499937
Alignment:
| Q |
93 |
aagattttgctacacattcaacaaacgtggttgtttaatgtgggagatt-gccactagcagttaaagtacttgggtcctattt |
174 |
Q |
| |
|
||||||||||||||||||||| | | |||||| ||| | |||| |||| |||||||||| || |||| |||||||||||||| |
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|
| T |
6500019 |
aagattttgctacacattcaaaagatgtggtttcttattctgggggatttgccactagcacttgaagttcttgggtcctattt |
6499937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 6547574 - 6547493
Alignment:
| Q |
93 |
aagattttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattt |
174 |
Q |
| |
|
|||||||||||||||||| ||| || |||||| ||| | ||| ||||| ||||||||| || |||| ||||| |||||||| |
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| T |
6547574 |
aagattttgctacacatttgacagacatggttgcttattctggaagatttccactagcacttgaagtccttggctcctattt |
6547493 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 6751147 - 6751224
Alignment:
| Q |
97 |
ttttgctacacattcaacaaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcctattt |
174 |
Q |
| |
|
||||||||||||||||| | | ||| ||| ||| | ||||||||| ||||||||| || |||| || ||||||||||| |
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|
| T |
6751147 |
ttttgctacacattcaaaagatgtgattgcttattctgggagattaccactagcacttgaagtcctcgggtcctattt |
6751224 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 6751069 - 6751125
Alignment:
| Q |
15 |
aatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaa |
71 |
Q |
| |
|
|||| |||||||| || || |||||||| || |||||||| |||||||||||||||| |
|
|
| T |
6751069 |
aataaaagaaatgaacgaaagtgaatctcttgagcttttcagttggcatgcattcaa |
6751125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 6771543 - 6771583
Alignment:
| Q |
134 |
gggagattgccactagcagttaaagtacttgggtcctattt |
174 |
Q |
| |
|
|||||||||||||||||| || |||| |||||||||||||| |
|
|
| T |
6771543 |
gggagattgccactagcacttgaagttcttgggtcctattt |
6771583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 170
Target Start/End: Complemental strand, 11637 - 11486
Alignment:
| Q |
15 |
aatagaagaaatggacaaaggtgaatctattaagcttttctgttggcatgcattcaattaatcgaccagtaccgataaaagattttgctacacattcaac |
114 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||||||| |||||||||||||| || | |||| || ||| || ||||||||| ||||||||| |
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|
| T |
11637 |
aatagaagaaatggatgaaagtgaatctcttaagcttttcagttggcatgcattc----aagcaaccaagtccaatagaatattttgctaaacattcaac |
11542 |
T |
|
| Q |
115 |
aaacgtggttgtttaatgtgggagattgccactagcagttaaagtacttgggtcct |
170 |
Q |
| |
|
| | ||| ||| ||| | |||||||||||||||||| || |||||||||| |||| |
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|
| T |
11541 |
agatgtgattgcttactcagggagattgccactagcacttgaagtacttggttcct |
11486 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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