View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18725_low_13 (Length: 236)
Name: NF18725_low_13
Description: NF18725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18725_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 5685055 - 5685259
Alignment:
| Q |
17 |
aagaactgtgttagataccaaaccagcaccctctatggccatcttctctagtagaggtcccaatattattgaccctaatattctaaaggtatttcccatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5685055 |
aagaactgtgttagataccaaaccagcaccctctatggccatcttctctagtagaggtcccaatattattgaccctaatattctaaaggtatttcccatg |
5685154 |
T |
|
| Q |
117 |
acacactttatcataatatcaattctttctctttagcatatgctattatatattatacaagatgtattaggaaatttaataatagtattttatttgtgtt |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5685155 |
acacactttatcataatatcaattgtttctctttagcatatgctattatatattatacaagatgtattaggaaatttaataatagtattttatttgtgtt |
5685254 |
T |
|
| Q |
217 |
ctctg |
221 |
Q |
| |
|
||||| |
|
|
| T |
5685255 |
ctctg |
5685259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 5697225 - 5697314
Alignment:
| Q |
17 |
aagaactgtgttagataccaaaccagcaccctctatggccatcttctctagtagaggtcccaatattattgaccctaatattctaaaggt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
5697225 |
aagaactgtgttagataccaaaccagcaccctctatggccatgttctctagcagaggtcccaacataattgaccctaatattctaaaggt |
5697314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University