View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18725_low_14 (Length: 235)
Name: NF18725_low_14
Description: NF18725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18725_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 5011900 - 5012039
Alignment:
| Q |
17 |
attattaattattgcagtcaaaggagaatgctaagctatggagtatggtaaataaattacaagctgaagtttctgattacaaggctaggctaactatact |
116 |
Q |
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| T |
5011900 |
attattagttattgcagtcaaaggagaatgctaagctatggagtatggtaaataaattacaagctgaagtttctgattacaaggctaggctaactatact |
5011999 |
T |
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| Q |
117 |
tgaacaagaagtttcgtcactcaaaaaagataaaatggaa |
156 |
Q |
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| T |
5012000 |
tgaacaagaagtttcgtcactcaaaaaagataaaatggaa |
5012039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 5018175 - 5018298
Alignment:
| Q |
18 |
ttattaattattgcagtcaaaggagaatgctaagctatggagtatggtaaataaattacaagctgaagtttctgattacaaggctaggctaactatactt |
117 |
Q |
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| T |
5018175 |
ttattaatttttgcagtcaatggagaatgctaagctctggagtatggtaaataagttgcaaactaaagtttttgattacaatgctaagttaactaagctt |
5018274 |
T |
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| Q |
118 |
gaacaagaagtttcgtcactcaaa |
141 |
Q |
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| T |
5018275 |
gaagaagaggtttcatcactcaaa |
5018298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 5006293 - 5006401
Alignment:
| Q |
50 |
agctatggagtatggtaaataaattacaagctgaagtttctgattacaaggctaggctaactatacttgaacaagaagtttcgtcactcaaaaaagataa |
149 |
Q |
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| T |
5006293 |
agctctggagtatggtaaataaattgcaagttgagctttctgaatacaaggaacggttaactaggcttgaagaggaagtttcatcactcaaaaagcataa |
5006392 |
T |
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| Q |
150 |
aatggaaaa |
158 |
Q |
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| T |
5006393 |
agtggaaaa |
5006401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 5012040 - 5012072
Alignment:
| Q |
187 |
ggacaaccacgaaagagagggaggcctgctaag |
219 |
Q |
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| T |
5012040 |
ggacaaccacgaaagagagggaggcctgctaag |
5012072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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