View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18725_low_16 (Length: 222)
Name: NF18725_low_16
Description: NF18725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18725_low_16 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 6943757 - 6943905
Alignment:
| Q |
54 |
attatgccatccagctgcatttttcaaagtaaaatagatttcatgattcaatcagcaatataatacaa-tttatttgacagaagccctcattagtaacaa |
152 |
Q |
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| T |
6943757 |
attatgccatccagttgcatttttcaaagtaaaataaatttcatgattcaatcagcaatataatacaactttatttgacagaagccctcattagtaacaa |
6943856 |
T |
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| Q |
153 |
caactttcgacaactcagtaggattttgaataagaggtcatgatatgtc |
201 |
Q |
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| T |
6943857 |
caactttcgacaactcagtaggattttgaataagaggtcatgatatgtc |
6943905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 6940590 - 6940652
Alignment:
| Q |
54 |
attatgccatccagctgcatttttcaaagtaaaatagatttcatgattcaatcagcaatataa |
116 |
Q |
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| T |
6940590 |
attatgccatccagctgcatttttcaaagtaaaataaatttcatgattcaatcagcgatataa |
6940652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 6549058 - 6549011
Alignment:
| Q |
61 |
catccagctgcatttttcaaagtaaaatagatttcatgattcaatcag |
108 |
Q |
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| T |
6549058 |
catccagctgcatttttcaaagtaaaataagtttcatgattcaatcag |
6549011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 6526221 - 6526171
Alignment:
| Q |
54 |
attatgccatccagctgcatttttcaaagtaaaatagatttcatgattcaa |
104 |
Q |
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| T |
6526221 |
attatgccatccagttgaatttttcaaagtaaaatacatttcataattcaa |
6526171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 6940666 - 6940716
Alignment:
| Q |
152 |
acaactttcgacaactcagtaggattttgaa-taagaggtcatgatatgtc |
201 |
Q |
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| T |
6940666 |
acaactttagacaactcagtagaattttgaattaagaggtcatgatatgtc |
6940716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 6943697 - 6943734
Alignment:
| Q |
13 |
caaaggggaattgtgcttttcaattcaatatgttctat |
50 |
Q |
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| T |
6943697 |
caaagggaaattgtgcttttcaattcaatatgttctat |
6943734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 89
Target Start/End: Complemental strand, 6774582 - 6774547
Alignment:
| Q |
54 |
attatgccatccagctgcatttttcaaagtaaaata |
89 |
Q |
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| T |
6774582 |
attatgccatccagcggcatttttcaaagtaaaata |
6774547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 6797918 - 6797852
Alignment:
| Q |
53 |
aattatgccatccagctgcatttttcaaagtaaaatagatttcatgattc-aatcagcaatataata |
118 |
Q |
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| T |
6797918 |
aattatgcgattcaactgaatttttcaaagtaaaatatattttatgattcaaatgagcaatataata |
6797852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 6842999 - 6842949
Alignment:
| Q |
54 |
attatgccatccagctgcatttttcaaagtaaaatagatttcatgattcaa |
104 |
Q |
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| T |
6842999 |
attatgtcatccagttgaatttttcaaagtaaaatacatttcataattcaa |
6842949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 6785301 - 6785261
Alignment:
| Q |
54 |
attatgccatccagctgcatttttcaaagtaaaatagattt |
94 |
Q |
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| T |
6785301 |
attatgccattcaactgcatttttcaaagtaaaatatattt |
6785261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 11090 - 11041
Alignment:
| Q |
54 |
attatgccatccagctgcatttttcaaagtaaaatagatttcatgattca |
103 |
Q |
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| T |
11090 |
attatgccatccagctgaatttttcaaagtaaaatacatttcataattca |
11041 |
T |
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