View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18725_low_17 (Length: 201)
Name: NF18725_low_17
Description: NF18725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18725_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 77 - 197
Target Start/End: Original strand, 42529436 - 42529556
Alignment:
| Q |
77 |
atgggaatctcagttcttggaaatacagatcaacaagtattgaatacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttt |
176 |
Q |
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| T |
42529436 |
atgggaatctcagttcttggaaatacagatcaacaagtattgaatacacaaggagggccaagccggatgccggttttgatctttttcagtcagattcttt |
42529535 |
T |
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| Q |
177 |
tgttgtaaaatttgatgatgt |
197 |
Q |
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| T |
42529536 |
tgttgtaaaatttgatgatgt |
42529556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 42535179 - 42535278
Alignment:
| Q |
98 |
aatacagatcaacaagtattgaatacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtaaaatttgatgatgt |
197 |
Q |
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| T |
42535179 |
aatacagatcaacacgcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgt |
42535278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 42535104 - 42535149
Alignment:
| Q |
14 |
tcatcaagagcctcttctacaacaagaacaatgactgccttattac |
59 |
Q |
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| T |
42535104 |
tcatcaggagactcttctacaacaagaacaatgactcacttattac |
42535149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 27821896 - 27821993
Alignment:
| Q |
22 |
agcctcttctacaacaagaacaatgactgccttattacgctgtctgattacggtcatgggaatctcagttcttggaaatacagatcaacaagtattga |
119 |
Q |
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| T |
27821896 |
agcctcttctacaacaagaacaatgactcacttattacagtgtctgtttatgcttctgagaatttcagttctttgaagtgcagatcaacaaggattga |
27821993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 27822082 - 27822138
Alignment:
| Q |
120 |
atacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttt |
176 |
Q |
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| T |
27822082 |
atacataaagagggccaagccggatgctggttttcctcttttccagtccgagtcttt |
27822138 |
T |
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