View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18725_low_2 (Length: 588)
Name: NF18725_low_2
Description: NF18725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18725_low_2 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Complemental strand, 23872149 - 23871575
Alignment:
| Q |
1 |
ggtttatccttgtgtcttgtggtttagcatttgtttaaaataaatcttccaacaacaaattaatggatcgttgaaatattttacacttgttatcatatca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23872149 |
ggtttatccttgtgtcttgtggtttagcatttgtttaaaataaatcttccaacaacaaattaatggatcgttgaaatattttacacttgttatcatatca |
23872050 |
T |
|
| Q |
101 |
tttaattttgnnnnnnnaagaagttaaattggtccacttaaatttacatcaagaagaatcgaatctaaaactttgagaggagctcatttcaatgttcagg |
200 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23872049 |
tttaattttgtttttttaagaagttaaattggtccacttaaatttacatcaagaagaatcgaatctaagactttgagaggagctcatttcaatgttcagg |
23871950 |
T |
|
| Q |
201 |
tcaacatcattaaactaactcacctaaatttgcatcgagaaaaatcgaaattgagactttggaagaaacacacttgcatgtccaagctaacatcactaga |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23871949 |
tcaacaccattaaactaactcacctaaatttgcatcgagaaaaatcgaaattgagactttggaagaaacacacttgcatgtccaagctaacatcactaga |
23871850 |
T |
|
| Q |
301 |
ccaactcaatttacgtttaatttgtacacgtgaatttaaaatttaatgttcagaaattgagaattctactttaacattccactcaaactcggattggtat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23871849 |
ccaactcaatttacgtttaatttgtacacgtgaatttaaaatttaatgttcaaaaattgagaattctactttaacattccactcaaactcggattggtat |
23871750 |
T |
|
| Q |
401 |
tccgtgctttaataaagcacacagttttcacgctatactaaatctcgaccattaattaaagatcaaacggtccaaatcaatacaannnnnnnacgagaga |
500 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23871749 |
tccgtgctttaataaagcacacagttttcactctatactaaatctcgaccattaattaaagatcaaacggtccaaatcaatacaattttattacgagaga |
23871650 |
T |
|
| Q |
501 |
ataatcaatacaattataaaatcattcaaaacaatatcagccacacattttaaagcagatggtggtcttcatctc |
575 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23871649 |
ataatcaatacaattataaaatcattcaaaacaatatcagccacacattttaaagcagatggtggtcttcatctc |
23871575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Original strand, 22706675 - 22707248
Alignment:
| Q |
1 |
ggtttatccttgtgtcttgtggtttagcatttgtttaaaataaatcttccaacaacaaattaatggatcgttgaaatattttacacttgttatcatatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22706675 |
ggtttatccttgtgtcttgtggtttagcatttgtttaaaataaatcttccaacaacaaattaatggatcgttgaaatattttacacttgttatcatatca |
22706774 |
T |
|
| Q |
101 |
tttaattttgnnnnnnnaagaagttaaattggtccacttaaatttacatcaagaagaatcgaatctaaaactttgagaggagctcatttcaatgttcagg |
200 |
Q |
| |
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|||||||||| || |||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||||| |||| |||| ||||||||||| |
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| T |
22706775 |
tttaattttgttttttgaa-aagtcaaaatggtccacttaaatttgcatcaagaagaatcgaatctaaaattttgagatgagcacattccaatgttcagg |
22706873 |
T |
|
| Q |
201 |
tcaacatcattaaactaactcacctaaatttgcatcgagaaaaatcgaaattgagactttggaagaaacacacttgcatgtccaagctaacatcactaga |
300 |
Q |
| |
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||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
22706874 |
ccaacaccatcaaactaactcacctaaatttgcattgagaagaatcgaaattgagactttgaaagaaacacacttgcatgtccaaactaacatcactaga |
22706973 |
T |
|
| Q |
301 |
ccaactcaatttacgtttaatttgtacac-gtgaatttaaaatttaatgttcagaaattgagaattctac-tttaacattccactcaaactcggattggt |
398 |
Q |
| |
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|||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
22706974 |
ccaactcaatttacatttaatttgtacactgtaaatttaaaatttaatgttcagaaattgagaattctacttttaacattccactcaaactcggattgat |
22707073 |
T |
|
| Q |
399 |
attccgtgctttaataaagcacacagttttcacgctatactaaatctcgaccattaattaaagatcaaacggtccaaatcaatacaannnnnnnacgaga |
498 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||| ||||||||| ||| |
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| T |
22707074 |
attccatgctgtaataaagcacacagttttcacgctatactaaatctcggccattaattaaagagcaaatgggccaattcaatacaattatttt-ttaga |
22707172 |
T |
|
| Q |
499 |
gaataatcaatacaattataaaatcattcaaaacaatatcagccacacattttaaagcagatggtggtcttcatct |
574 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22707173 |
gaataatcaatacaattataatatcattcaaaacaatttcagccacacattttaaagcagatggtggtcttcatct |
22707248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22708707 - 22708769
Alignment:
| Q |
1 |
ggtttatccttgtgtcttgtggtttagcatttgtttaaaataaatcttccaacaacaaattaa |
63 |
Q |
| |
|
|||||| | |||| |||||||||||||||||||||||||||||||| |||| || |||||||| |
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|
| T |
22708707 |
ggtttagctttgtttcttgtggtttagcatttgtttaaaataaatcatccatcagcaaattaa |
22708769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 470
Target Start/End: Complemental strand, 11575828 - 11575768
Alignment:
| Q |
410 |
taataaagcacacagttttcacgctatactaaatctcgaccattaattaaagatcaaacgg |
470 |
Q |
| |
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|||||||||||||||||| |||| | ||||||||||| | ||||||||||| ||||||||| |
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| T |
11575828 |
taataaagcacacagtttgcacgttgtactaaatctcaatcattaattaaatatcaaacgg |
11575768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22719070 - 22719114
Alignment:
| Q |
1 |
ggtttatccttgtgtcttgtggtttagcatttgtttaaaataaat |
45 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||||||||||||||| |
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| T |
22719070 |
ggtttagccttgtttcttgtggttttgcatttgtttaaaataaat |
22719114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 391 - 481
Target Start/End: Original strand, 47812794 - 47812884
Alignment:
| Q |
391 |
ggattggtattccgtgctttaataaagcacacagttttcacgctatactaaatctcgaccattaattaaagatcaaacggtccaaatcaat |
481 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||| |||| ||| || ||||||||||||||||||| ||| ||||||||| |
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|
| T |
47812794 |
ggattgggattccgtgctgtaataaagcacacagttttcacgctgtactgaatttcagccattaattaaagatcaaatggttcaaatcaat |
47812884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 549
Target Start/End: Original strand, 47812878 - 47812924
Alignment:
| Q |
503 |
aatcaatacaattataaaatcattcaaaacaatatcagccacacatt |
549 |
Q |
| |
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||||||| || ||||||||||||||||||||||||||||| |||||| |
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| T |
47812878 |
aatcaatgcagttataaaatcattcaaaacaatatcagccgcacatt |
47812924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 481
Target Start/End: Complemental strand, 28851115 - 28851024
Alignment:
| Q |
390 |
cggattggtattccgtgctttaataaagcacacagttttcacgctatactaaatctcgaccattaattaaagatcaaacggtccaaatcaat |
481 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||| || | ||| || ||||||||||||||||||| ||| ||||||||| |
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| T |
28851115 |
cggattgggattccgtgctgtaataaagcacacagttttcacgctgtattgaatttcagccattaattaaagatcaaatggttcaaatcaat |
28851024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 468
Target Start/End: Complemental strand, 16677372 - 16677303
Alignment:
| Q |
399 |
attccgtgctttaataaagcacacagttttcacgctatactaaatctcgaccattaattaaagatcaaac |
468 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||| || ||| ||||||||||| |||| |||||||||| |
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| T |
16677372 |
attccgtgctgtaattaagctcacagttttcacactgtacatgatctcgaccatgaattgaagatcaaac |
16677303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 399 - 481
Target Start/End: Complemental strand, 35003579 - 35003497
Alignment:
| Q |
399 |
attccgtgctttaataaagcacacagttttcacgctatactaaatctcgaccattaattaaagatcaaacggtccaaatcaat |
481 |
Q |
| |
|
|||||||| | ||||||||||||||||||| | | | |||||||||||||||||||||||||||| || ||| ||||||||| |
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|
| T |
35003579 |
attccgtgttgtaataaagcacacagtttttatgatgtactaaatctcgaccattaattaaagattgaatggttcaaatcaat |
35003497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 471
Target Start/End: Original strand, 14608662 - 14608741
Alignment:
| Q |
391 |
ggattggtattccgtgctttaataaagcacacagttttcacgctatactaaatctcgaccattaattaaagatcaaacggt |
471 |
Q |
| |
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||||||| |||||||||| || |||||||||||||||| ||||| ||| ||| ||| ||||||||||||||||||||| |
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| T |
14608662 |
ggattgggattccgtgctgtagtaaagcacacagtttt-acgctgtacaggatcctgactattaattaaagatcaaacggt |
14608741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 391 - 484
Target Start/End: Complemental strand, 1700984 - 1700891
Alignment:
| Q |
391 |
ggattggtattccgtgctttaataaagcacacagttttcacgctatactaaatctcgaccattaattaaagatcaaacggtccaaatcaataca |
484 |
Q |
| |
|
||||||| |||||||| | || |||||||| || |||||||||| ||| | ||| ||||||||||||||||||||||||| || || |||||| |
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| T |
1700984 |
ggattgggattccgtgttgtagtaaagcacgcaattttcacgctgtacaagatcctgaccattaattaaagatcaaacggtacagattaataca |
1700891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 471
Target Start/End: Complemental strand, 208715 - 208636
Alignment:
| Q |
391 |
ggattggtattccgtgctttaataaagcacacagttttcacgctatactaaatctcgaccattaattaaagatcaaacggt |
471 |
Q |
| |
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||||||| |||||||||| || |||||||||||||||| ||||| ||| ||| ||| ||||||||||||||||||||| |
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| T |
208715 |
ggattgggattccgtgctgtagtaaagcacacagtttt-acgctgtacaggatcctgactattaattaaagatcaaacggt |
208636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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