View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18725_low_3 (Length: 450)
Name: NF18725_low_3
Description: NF18725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18725_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 9796505 - 9796278
Alignment:
| Q |
19 |
ggtacaacaaggagtgtttcgtgggttgagcccaactgcattattcaatatgtttgcgcaaatgttcaagtttaaaaggttacaattttgcgggggtgtg |
118 |
Q |
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| T |
9796505 |
ggtacaacaacgattgtttcgtgggttgagcacaactacattattcaatactttggcgcaaatgttcaagtttaaaaggttacaattttgcgggggtgtc |
9796406 |
T |
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| Q |
119 |
accggaatcggtggtggtgtagaaggaggtgtcgtaggaattgacggtggtgtggaaggaggtgtcgtaggtgggggcgtcaaaggtggaggtgcggaag |
218 |
Q |
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| T |
9796405 |
accggaatcggtggtggtgtagaaggaggtgtcctaggaattgacggtggtgtggaaggaggtgtcgtaggtgggggtgtcgaaggtggaggtgcggaag |
9796306 |
T |
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| Q |
219 |
gagttatgataggtggtgatggagaagg |
246 |
Q |
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| T |
9796305 |
gagttatgataggtggtgatggagaagg |
9796278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 9802506 - 9802279
Alignment:
| Q |
19 |
ggtacaacaaggagtgtttcgtgggttgagcccaactgcattattcaatatgtttgcgcaaatgttcaagtttaaaaggttacaattttgcgggggtgtg |
118 |
Q |
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| T |
9802506 |
ggtacaacaacgattgtttcgtgggttgagcacaactacattattcaatactttggcgcaaatgttcaagtttaaaaggttacaattttgcgggggtgtc |
9802407 |
T |
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| Q |
119 |
accggaatcggtggtggtgtagaaggaggtgtcgtaggaattgacggtggtgtggaaggaggtgtcgtaggtgggggcgtcaaaggtggaggtgcggaag |
218 |
Q |
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| T |
9802406 |
accggaatcggtggtggtgtagaaggaggtgtcctaggaattgacggtggtgtggaaggaggtgtcgtaggtgggggtgtcgaaggtggaggtgcggaag |
9802307 |
T |
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| Q |
219 |
gagttatgataggtggtgatggagaagg |
246 |
Q |
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| T |
9802306 |
gagttatgataggtggtgatggagaagg |
9802279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 9757218 - 9757151
Alignment:
| Q |
122 |
ggaatcggtggtggtgtagaaggaggtgtcgtaggaattgacggtggtgtggaaggaggtgtcgtagg |
189 |
Q |
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| T |
9757218 |
ggaattggtggtggtgtaaaaggaggtgtcctaggaattggtggtggtgtcgaaggaggtgtcctagg |
9757151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 9757185 - 9757118
Alignment:
| Q |
122 |
ggaatcggtggtggtgtagaaggaggtgtcgtaggaattgacggtggtgtggaaggaggtgtcgtagg |
189 |
Q |
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| T |
9757185 |
ggaattggtggtggtgtcgaaggaggtgtcctaggatttggtggtggtgtggtaggaggtgtcctagg |
9757118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 9757065 - 9756998
Alignment:
| Q |
122 |
ggaatcggtggtggtgtagaaggaggtgtcgtaggaattgacggtggtgtggaaggaggtgtcgtagg |
189 |
Q |
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| T |
9757065 |
ggaattggtggtggtatggtaggaggtgtcctaggatttgtcggtggtgtggtaggaggtgtcctagg |
9756998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 9756918 - 9756865
Alignment:
| Q |
128 |
ggtggtggtgtagaaggaggtgtcgtaggaattgacggtggtgtggaaggaggt |
181 |
Q |
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| T |
9756918 |
ggtggtggtgtcgaaggaggtgtcataggatttggtggtggtgtggtaggaggt |
9756865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 9757092 - 9757031
Alignment:
| Q |
128 |
ggtggtggtgtagaaggaggtgtcgtaggaattgacggtggtgtggaaggaggtgtcgtagg |
189 |
Q |
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| T |
9757092 |
ggtggtggtgtggtaggaggtgtcctaggaattggtggtggtatggtaggaggtgtcctagg |
9757031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 9756831 - 9756775
Alignment:
| Q |
128 |
ggtggtggtgtagaaggaggtgtcgtaggaattgacggtggtgtggaaggaggtgtc |
184 |
Q |
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| T |
9756831 |
ggtggtggtgtggtaggaggtgtcctgggatttgtcggtggtgtggtaggaggtgtc |
9756775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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