View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18725_low_4 (Length: 380)

Name: NF18725_low_4
Description: NF18725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18725_low_4
NF18725_low_4
[»] chr8 (15 HSPs)
chr8 (244-365)||(22233961-22234083)
chr8 (247-365)||(22222777-22222896)
chr8 (247-365)||(22229119-22229238)
chr8 (315-365)||(3298803-3298854)
chr8 (315-365)||(8743393-8743444)
chr8 (315-365)||(9068277-9068328)
chr8 (315-365)||(11309097-11309148)
chr8 (315-365)||(16580086-16580137)
chr8 (315-365)||(16958551-16958602)
chr8 (315-365)||(27348027-27348078)
chr8 (315-365)||(28370094-28370145)
chr8 (315-365)||(28926253-28926304)
chr8 (315-365)||(41577441-41577492)
chr8 (315-365)||(13509965-13510015)
chr8 (315-365)||(13599495-13599545)
[»] chr2 (13 HSPs)
chr2 (11-124)||(490781-490894)
chr2 (11-116)||(493049-493154)
chr2 (16-85)||(9787866-9787935)
chr2 (315-365)||(492740-492790)
chr2 (315-365)||(8687783-8687834)
chr2 (315-365)||(29223716-29223767)
chr2 (315-365)||(29337015-29337066)
chr2 (315-365)||(36040372-36040423)
chr2 (315-365)||(36557632-36557683)
chr2 (315-365)||(42702316-42702367)
chr2 (315-363)||(28457989-28458038)
chr2 (315-362)||(11651817-11651865)
chr2 (318-365)||(14700645-14700693)
[»] chr6 (16 HSPs)
chr6 (233-365)||(13173926-13174059)
chr6 (233-365)||(13182459-13182592)
chr6 (278-365)||(1454761-1454847)
chr6 (278-365)||(1466453-1466539)
chr6 (315-365)||(14270673-14270723)
chr6 (315-365)||(34913450-34913500)
chr6 (315-359)||(25976951-25976995)
chr6 (315-365)||(5989112-5989163)
chr6 (315-365)||(3539048-3539099)
chr6 (315-365)||(14479561-14479612)
chr6 (315-365)||(26510422-26510473)
chr6 (315-365)||(26515538-26515589)
chr6 (315-365)||(26604340-26604391)
chr6 (315-365)||(32806872-32806923)
chr6 (315-365)||(34006503-34006554)
chr6 (145-175)||(32821648-32821678)
[»] chr1 (9 HSPs)
chr1 (11-116)||(36079895-36080000)
chr1 (315-364)||(8996373-8996422)
chr1 (315-365)||(36080221-36080271)
chr1 (315-365)||(15161104-15161154)
chr1 (315-365)||(13218155-13218206)
chr1 (315-365)||(33492308-33492359)
chr1 (315-365)||(38122042-38122093)
chr1 (315-365)||(39001291-39001342)
chr1 (315-365)||(41000213-41000264)
[»] chr3 (17 HSPs)
chr3 (11-141)||(2356817-2356943)
chr3 (11-116)||(49433778-49433883)
chr3 (140-240)||(2356968-2357073)
chr3 (315-365)||(49434098-49434148)
chr3 (315-365)||(2357162-2357212)
chr3 (315-365)||(33247989-33248040)
chr3 (315-365)||(3588401-3588452)
chr3 (315-365)||(7653332-7653383)
chr3 (315-365)||(8615504-8615555)
chr3 (315-365)||(9989397-9989448)
chr3 (315-365)||(10386180-10386231)
chr3 (315-365)||(20963763-20963814)
chr3 (315-365)||(27030793-27030844)
chr3 (315-365)||(37471796-37471847)
chr3 (315-365)||(45527648-45527699)
chr3 (315-363)||(52308197-52308246)
chr3 (318-365)||(26335121-26335169)
[»] scaffold0160 (1 HSPs)
scaffold0160 (315-365)||(35393-35443)
[»] scaffold0505 (1 HSPs)
scaffold0505 (315-365)||(1094-1144)
[»] scaffold0298 (2 HSPs)
scaffold0298 (315-365)||(12312-12362)
scaffold0298 (315-365)||(16082-16132)
[»] scaffold0124 (1 HSPs)
scaffold0124 (315-365)||(12196-12246)
[»] chr7 (16 HSPs)
chr7 (315-365)||(2477659-2477710)
chr7 (315-365)||(22909119-22909169)
chr7 (315-365)||(29032894-29032944)
chr7 (315-365)||(2631397-2631448)
chr7 (315-365)||(6172528-6172579)
chr7 (315-365)||(8107998-8108049)
chr7 (315-365)||(10346415-10346466)
chr7 (315-365)||(12183867-12183918)
chr7 (315-365)||(12190844-12190895)
chr7 (315-365)||(19472373-19472424)
chr7 (315-365)||(31158386-31158437)
chr7 (315-365)||(31664604-31664655)
chr7 (315-365)||(33160183-33160234)
chr7 (315-365)||(19063515-19063565)
chr7 (315-363)||(1953958-1954007)
chr7 (315-359)||(31878602-31878647)
[»] scaffold0091 (1 HSPs)
scaffold0091 (315-365)||(14186-14236)
[»] chr5 (10 HSPs)
chr5 (315-365)||(32226834-32226884)
chr5 (315-365)||(7314966-7315017)
chr5 (315-365)||(9404425-9404476)
chr5 (315-365)||(11723386-11723437)
chr5 (315-365)||(11766756-11766807)
chr5 (315-365)||(31845981-31846032)
chr5 (315-365)||(33434604-33434655)
chr5 (315-365)||(34456298-34456349)
chr5 (315-364)||(27167208-27167258)
chr5 (315-365)||(39656148-39656198)
[»] scaffold1494 (1 HSPs)
scaffold1494 (315-365)||(1565-1616)
[»] scaffold0159 (1 HSPs)
scaffold0159 (315-365)||(29009-29060)
[»] scaffold0076 (1 HSPs)
scaffold0076 (315-365)||(25760-25811)
[»] scaffold0059 (1 HSPs)
scaffold0059 (315-365)||(16583-16634)
[»] scaffold0019 (1 HSPs)
scaffold0019 (315-365)||(116677-116728)
[»] scaffold0014 (1 HSPs)
scaffold0014 (315-365)||(76561-76612)
[»] chr4 (7 HSPs)
chr4 (315-365)||(4839246-4839297)
chr4 (315-365)||(5273661-5273712)
chr4 (315-365)||(6639978-6640029)
chr4 (315-365)||(30218501-30218552)
chr4 (316-365)||(46692146-46692196)
chr4 (315-359)||(21677783-21677828)
chr4 (315-359)||(52618515-52618560)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 244 - 365
Target Start/End: Complemental strand, 22234083 - 22233961
Alignment:
Q  244 cacgtttttcttgtagaaacagcaccatctttg-agattttttgggttcttagagaaagatgcaattacattgagaaacacaaagcaaagtgttaggagt 342  Q
    |||||||| |||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||    
T  22234083 cacgttttgcttggaggaacagcaccatttttggagattttttgggttcttagagaaagatgcaattccatagagaaacacaaagcaaggtgttaggagt 22233984  T
Q  343 agattctacccaagatttgttga 365  Q
    |||||||||||||||||||||||    
T  22233983 agattctacccaagatttgttga 22233961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 365
Target Start/End: Complemental strand, 22222896 - 22222777
Alignment:
Q  247 gtttttcttgtagaaacagcaccatctttg-agattttttgggttcttagagaaagatgcaattacattgagaaacacaaagcaaagtgttaggagtaga 345  Q
    ||||| |||| || |||| |||||| |||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||    
T  22222896 gttttgcttggaggaacaacaccatttttggagattttttgggttcttagagaaagatgcaattccatagagaaacacaaagcaaggtgttaggagtaga 22222797  T
Q  346 ttctacccaagatttgttga 365  Q
    ||||||||||||||||||||    
T  22222796 ttctacccaagatttgttga 22222777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 365
Target Start/End: Complemental strand, 22229238 - 22229119
Alignment:
Q  247 gtttttcttgtagaaacagcaccatctttg-agattttttgggttcttagagaaagatgcaattacattgagaaacacaaagcaaagtgttaggagtaga 345  Q
    ||||| |||| || |||| |||||| |||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||    
T  22229238 gttttgcttggaggaacaacaccatttttggagattttttgggttcttagagaaagatgcaattccatagagaaacacaaagcaaggtgttaggagtaga 22229139  T
Q  346 ttctacccaagatttgttga 365  Q
    ||||||||||||||||||||    
T  22229138 ttctacccaagatttgttga 22229119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 3298803 - 3298854
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  3298803 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 3298854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 8743444 - 8743393
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  8743444 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 8743393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 9068328 - 9068277
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  9068328 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 9068277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 11309148 - 11309097
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  11309148 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 11309097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 16580086 - 16580137
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  16580086 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 16580137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 16958551 - 16958602
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || |||| |||||||||| ||||||||||||||||    
T  16958551 gagaaacacaaagcaaggtagttaagagtagattcaacccaagatttgttga 16958602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 27348027 - 27348078
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  27348027 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 27348078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 28370094 - 28370145
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  28370094 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 28370145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 28926304 - 28926253
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  28926304 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 28926253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 41577492 - 41577441
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  41577492 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 41577441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 13509965 - 13510015
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    ||||||||||||||||  |||||| ||||||||| ||| ||||||||||||    
T  13509965 gagaaacacaaagcaagatgttagaagtagattcaacctaagatttgttga 13510015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 13599495 - 13599545
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    ||||||||||||||||  |||||| ||||||||| ||| ||||||||||||    
T  13599495 gagaaacacaaagcaagatgttagaagtagattcaacctaagatttgttga 13599545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 490894 - 490781
Alignment:
Q  11 cataggagcaaagaaagaaaacttaattgtacttctatggattttattgatgtgccacttgcctttaaattatggattggtgtgaattagcaaacaagga 110  Q
    |||||||||||||||| ||||||||||||| |||||||  |||||||| ||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  490894 cataggagcaaagaaataaaacttaattgtgcttctataaattttatttatgtgccacttgcctttaaatcatgggttggtgtgaataagcaaacaagga 490795  T
Q  111 ggtgcattcacaaa 124  Q
    |||||| |||||||    
T  490794 ggtgcagtcacaaa 490781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 493154 - 493049
Alignment:
Q  11 cataggagcaaagaaagaaaacttaattgtacttctatggattttattgatgtgccacttgcctttaaattatggattggtgtgaattagcaaacaagga 110  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||||||||||||| || |||| ||||||||||| ||||||||||||    
T  493154 cataggagcaaagaaataaaacttaattgtgcttctatagattttatttatgtgccacttgcctttatatcatgggttggtgtgaataagcaaacaagga 493055  T
Q  111 ggtgca 116  Q
    ||||||    
T  493054 ggtgca 493049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 9787935 - 9787866
Alignment:
Q  16 gagcaaagaaagaaaacttaattgtacttctatggattttattgatgtgccacttgcctttaaattatgg 85  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||    
T  9787935 gagcaaagaaagaaaacttaattgtgcttctatgaattttattgatgtgtcacttgcctttaaattatgg 9787866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 492740 - 492790
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  492740 gagaaacacaaatcaaggtgttaggagtagattctacccaagatttgttga 492790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 8687834 - 8687783
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  8687834 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 8687783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 29223716 - 29223767
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  29223716 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 29223767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 29337015 - 29337066
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  29337015 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 29337066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 36040423 - 36040372
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  36040423 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 36040372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 36557683 - 36557632
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||| ||||| || ||||||||||||||| ||||||||||||||||    
T  36557683 gagaaacacatagcaaggtagttaggagtagattcaacccaagatttgttga 36557632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 42702367 - 42702316
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  42702367 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 42702316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 28458038 - 28457989
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgtt 363  Q
    |||||||||||||||| || ||||||||||||||| || |||||||||||    
T  28458038 gagaaacacaaagcaaggtagttaggagtagattcaactcaagatttgtt 28457989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 11651817 - 11651865
Alignment:
Q  315 gagaaacacaaagcaaag-tgttaggagtagattctacccaagatttgt 362  Q
    |||||||||||||||| | ||||| ||||||||||| ||||||||||||    
T  11651817 gagaaacacaaagcaagggtgttatgagtagattcttcccaagatttgt 11651865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 14700645 - 14700693
Alignment:
Q  318 aaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    ||||||||||||| || |||| |||||||||| ||||||||||||||||    
T  14700645 aaacacaaagcaaggtagttaagagtagattcaacccaagatttgttga 14700693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 233 - 365
Target Start/End: Complemental strand, 13174059 - 13173926
Alignment:
Q  233 agaagggggaccacgtttttcttgtagaaacagcaccatctttg-agattttttgggttcttagagaaagatgcaattacattgagaaacacaaagcaaa 331  Q
    ||||||| || ||||||||||||| || ||| ||||||| |||| |||||||||||||||||||||||||||||| ||  || || |||||||||| ||     
T  13174059 agaagggagatcacgtttttcttggaggaacggcaccatttttggagattttttgggttcttagagaaagatgcatttctatagaaaaacacaaagtaag 13173960  T
Q  332 gtgttaggagtagattctacccaagatttgttga 365  Q
    ||||||||||||||||||||||||||||||||||    
T  13173959 gtgttaggagtagattctacccaagatttgttga 13173926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 233 - 365
Target Start/End: Complemental strand, 13182592 - 13182459
Alignment:
Q  233 agaagggggaccacgtttttcttgtagaaacagcaccatctttg-agattttttgggttcttagagaaagatgcaattacattgagaaacacaaagcaaa 331  Q
    ||||||| || ||||||||||||| || ||| ||||||| |||| |||||||||||||||||||||||||||||| ||  || || |||||||||| ||     
T  13182592 agaagggagatcacgtttttcttggaggaacggcaccatttttggagattttttgggttcttagagaaagatgcatttctatagaaaaacacaaagtaag 13182493  T
Q  332 gtgttaggagtagattctacccaagatttgttga 365  Q
    ||||||||||||||||||||||||||||||||||    
T  13182492 gtgttaggagtagattctacccaagatttgttga 13182459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 365
Target Start/End: Original strand, 1454761 - 1454847
Alignment:
Q  278 gattttttgggttcttagagaaagatgcaattacattgagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    |||||||| |||| || |||||||||||| ||  || |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1454761 gatttttttggtt-ttggagaaagatgcatttctatagagaaacacaaagcaaggtgttaggagtagattctacccaagatttgttga 1454847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 365
Target Start/End: Original strand, 1466453 - 1466539
Alignment:
Q  278 gattttttgggttcttagagaaagatgcaattacattgagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    |||||||| |||| || |||||||||||| ||  || |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1466453 gatttttttggtt-ttggagaaagatgcatttctatagagaaacacaaagcaaggtgttaggagtagattctacccaagatttgttga 1466539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 14270673 - 14270723
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  14270673 gagaaacacaaagcaaggtgttaggagtagattcaacccaagatttgttga 14270723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 34913450 - 34913500
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  34913450 gagaaacacaaagcaaggtgttaggagtagattcaacccaagatttgttga 34913500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 25976951 - 25976995
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatt 359  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||    
T  25976951 gagaaacacaaagcaaggtgttaggagtagattcaacccaagatt 25976995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 5989163 - 5989112
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  5989163 gagaaacacaaagcaaggtagttaggagtagattcaacccaagatttgttga 5989112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 3539048 - 3539099
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  3539048 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 3539099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 14479561 - 14479612
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  14479561 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 14479612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 26510473 - 26510422
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  26510473 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 26510422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 26515589 - 26515538
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  26515589 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 26515538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 26604340 - 26604391
Alignment:
Q  315 gagaaacacaaagcaaag-tgttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| | |||||| |||||||||| |||||||||||||||    
T  26604340 gagaaacacaaagcaagggtgttagaagtagattcttcccaagatttgttga 26604391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 32806923 - 32806872
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  32806923 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 32806872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 34006503 - 34006554
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  34006503 gagaaacacaaagcaaggtagttaggagtagattcaaaccaagatttgttga 34006554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 175
Target Start/End: Original strand, 32821648 - 32821678
Alignment:
Q  145 acccgagagttacaaagaaggaggtcttgca 175  Q
    |||||||||||||||||||||||||||||||    
T  32821648 acccgagagttacaaagaaggaggtcttgca 32821678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 36079895 - 36080000
Alignment:
Q  11 cataggagcaaagaaagaaaacttaattgtacttctatggattttattgatgtgccacttgcctttaaattatggattggtgtgaattagcaaacaagga 110  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  36079895 cataggagcaaagaaataaaacttaattgtgcttctatagattttatttatgtgccacttgcctttaaatcatgggttggtgtgaataagcaaacaagga 36079994  T
Q  111 ggtgca 116  Q
    | ||||    
T  36079995 gctgca 36080000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 8996422 - 8996373
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttg 364  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  8996422 gagaaacacaaagcaaggtgttaggagtagattcaacccaagatttgttg 8996373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 36080221 - 36080271
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| ||||||||||||||||||| |||||| |||||||    
T  36080221 gagaaacacaaagcaaggtgttaggagtagattctatccaagacttgttga 36080271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 15161104 - 15161154
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    ||||||||||||||||  | ||||||||||||||| |||||||||||||||    
T  15161104 gagaaacacaaagcaagatattaggagtagattcttcccaagatttgttga 15161154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 13218206 - 13218155
Alignment:
Q  315 gagaaacacaaagcaaagtg-ttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| ||| |||||||||||||| | ||||||||||||||    
T  13218206 gagaaacacaaagcaaggtggttaggagtagattcaagccaagatttgttga 13218155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 33492359 - 33492308
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  33492359 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 33492308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 38122093 - 38122042
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  38122093 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 38122042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 39001342 - 39001291
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  39001342 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 39001291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 41000264 - 41000213
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  41000264 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 41000213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 2356817 - 2356943
Alignment:
Q  11 cataggagcaaagaaagaaaacttaattgtacttctatggattttattgatgtgccacttgcctttaaattatggattggtgtgaattagcaaacaagga 110  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||   ||  |    
T  2356817 cataggagcaaagaaagaaaacttaattgtgcttctatggattttattgatgtgccacttgcctttaaatcatgggtt-gtgtgaataagca---aaata 2356912  T
Q  111 ggtgcattcacaaaatgattaagggagaatt 141  Q
    ||||||  | |||||||||||||||||||||    
T  2356913 ggtgcagccgcaaaatgattaagggagaatt 2356943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 49433778 - 49433883
Alignment:
Q  11 cataggagcaaagaaagaaaacttaattgtacttctatggattttattgatgtgccacttgcctttaaattatggattggtgtgaattagcaaacaagga 110  Q
    |||||||||||||||| ||||||||||||| |||||||  |||||||| ||||||||||||||||||||| |||| ||||||||||| |||||| |||||    
T  49433778 cataggagcaaagaaataaaacttaattgtgcttctatatattttatttatgtgccacttgcctttaaatcatgggttggtgtgaataagcaaataagga 49433877  T
Q  111 ggtgca 116  Q
    ||||||    
T  49433878 ggtgca 49433883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 2356968 - 2357073
Alignment:
Q  140 ttttgacccgagagttacaaagaaggaggtcttgcactctttatgaatgag-----accgcagaacaaaagaagggaggaggtatcacacttttgaaaag 234  Q
    |||| ||||||||||||||||||||||||||||||||   ||||||| |||     |  |||||||||| ||| ||||||||||||||||||||||||||    
T  2356968 tttttacccgagagttacaaagaaggaggtcttgcacatcttatgaacgaggaatgatggcagaacaaaggaatggaggaggtatcacacttttgaaaag 2357067  T
Q  235 aagggg 240  Q
    ||||||    
T  2357068 aagggg 2357073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 49434098 - 49434148
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49434098 gagaaacacaaagcaaggtgttaggagtagattctacccaagatttgttga 49434148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 2357162 - 2357212
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  2357162 gagaaacacaaagcaagatgttaggagtagattcaacccaagatttgttga 2357212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 33247989 - 33248040
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  33247989 gagaaacacaaagcaaggtagttaggagtagattcaacccaagatttgttga 33248040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 3588401 - 3588452
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  3588401 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 3588452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 7653383 - 7653332
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  7653383 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 7653332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 8615504 - 8615555
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  8615504 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 8615555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 9989397 - 9989448
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  9989397 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 9989448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 10386231 - 10386180
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  10386231 gagaaacacaaagcaaggtagttaggagtagattcgagccaagatttgttga 10386180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 20963814 - 20963763
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  20963814 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 20963763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 27030844 - 27030793
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  27030844 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 27030793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 37471847 - 37471796
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    ||||||||||||||||||| ||||||||||||||| | |||| |||||||||    
T  37471847 gagaaacacaaagcaaagtagttaggagtagattcaagccaaaatttgttga 37471796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 45527648 - 45527699
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  45527648 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 45527699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 52308246 - 52308197
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgtt 363  Q
    |||||||||||||||| || ||||||||||||||||| |||| |||||||    
T  52308246 gagaaacacaaagcaaggtagttaggagtagattctagccaatatttgtt 52308197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 26335121 - 26335169
Alignment:
Q  318 aaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    ||||||||||||| || |||| |||||||||| ||||||||||||||||    
T  26335121 aaacacaaagcaaggtagttaagagtagattcaacccaagatttgttga 26335169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 35443 - 35393
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35443 gagaaacacaaagcaaggtgttaggagtagattctacccaagatttgttga 35393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 1144 - 1094
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    ||||||||||||| || ||||||||||||||||||| ||||||||||||||    
T  1144 gagaaacacaaagtaaggtgttaggagtagattctatccaagatttgttga 1094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 12362 - 12312
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  12362 gagaaacacaaagcaaggtgttaggagtagattcaacccaagatttattga 12312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 16132 - 16082
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  16132 gagaaacacaaagcaaggtgttaggagtagattcaacccaagatttattga 16082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 12196 - 12246
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  12196 gagaaacacaaagcaaggtgttaggagtagattcaacccaagatttattga 12246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 2477659 - 2477710
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  2477659 gagaaacacaaagcaaggtagttaggagtagattcaacccaagatttgttga 2477710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 22909119 - 22909169
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| ||||||||||||||||| | | ||||||||||||    
T  22909119 gagaaacacaaagcaaggtgttaggagtagattcaatctaagatttgttga 22909169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 29032944 - 29032894
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    ||||||||||||| || |||||||||||||||||||  |||||||||||||    
T  29032944 gagaaacacaaagtaaggtgttaggagtagattctattcaagatttgttga 29032894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 2631397 - 2631448
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  2631397 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 2631448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 6172528 - 6172579
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  6172528 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 6172579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 8108049 - 8107998
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  8108049 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 8107998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 10346466 - 10346415
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  10346466 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 10346415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 12183867 - 12183918
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  12183867 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 12183918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 12190844 - 12190895
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  12190844 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 12190895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 19472424 - 19472373
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  19472424 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 19472373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 31158437 - 31158386
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  31158437 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 31158386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 31664655 - 31664604
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  31664655 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 31664604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 33160183 - 33160234
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  33160183 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 33160234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 19063515 - 19063565
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    ||||||||||||| || ||||||||||||||||| ||| || |||||||||    
T  19063515 gagaaacacaaagtaaggtgttaggagtagattcaacctaaaatttgttga 19063565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 1953958 - 1954007
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgtt 363  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||    
T  1953958 gagaaacacaaagcaatgtagttaggagtagattcaagccaagatttgtt 1954007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 31878602 - 31878647
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatt 359  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||    
T  31878602 gagaaacacaaagcaaggtagttaggagtagattcaacccaagatt 31878647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 14186 - 14236
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    |||| ||||||||||| ||||||||||||||||| || |||||||||||||    
T  14186 gagagacacaaagcaaggtgttaggagtagattcaactcaagatttgttga 14236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 32226834 - 32226884
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| ||||||||||||||||| ||| || |||||||||    
T  32226834 gagaaacacaaagcaaggtgttaggagtagattcaacctaaaatttgttga 32226884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 7314966 - 7315017
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  7314966 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 7315017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 9404425 - 9404476
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  9404425 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 9404476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 11723437 - 11723386
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  11723437 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 11723386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 11766756 - 11766807
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  11766756 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 11766807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 31845981 - 31846032
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  31845981 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 31846032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 33434604 - 33434655
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  33434604 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 33434655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 34456298 - 34456349
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  34456298 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 34456349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 27167258 - 27167208
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttg 364  Q
    |||||||||||||||| || ||||||||||||||| | |||||||||||||    
T  27167258 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttg 27167208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 39656198 - 39656148
Alignment:
Q  315 gagaaacacaaagcaaagtgttaggagtagattctacccaagatttgttga 365  Q
    ||||||||||| | || ||||||||||||||||||||  ||||||||||||    
T  39656198 gagaaacacaacgtaaggtgttaggagtagattctacaaaagatttgttga 39656148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 1565 - 1616
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  1565 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 1616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 29060 - 29009
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  29060 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 29009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 25811 - 25760
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  25811 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 25760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 16634 - 16583
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    ||||||||||||| || || |||| |||||||||||||||||||||||||||    
T  16634 gagaaacacaaagtaaggtagttaagagtagattctacccaagatttgttga 16583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 116728 - 116677
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  116728 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 116677  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 76612 - 76561
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  76612 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 76561  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 4839297 - 4839246
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  4839297 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 4839246  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 5273712 - 5273661
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  5273712 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 5273661  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 6639978 - 6640029
Alignment:
Q  315 gagaaacacaaagcaaag-tgttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| | ||||||||||||||||| ||||| |||||||||    
T  6639978 gagaaacacaaagcaagggtgttaggagtagattcttcccaaaatttgttga 6640029  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 30218552 - 30218501
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    |||||||||||||||| || |||| |||||||||| ||||||||||||||||    
T  30218552 gagaaacacaaagcaaggtagttaagagtagattcaacccaagatttgttga 30218501  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 46692196 - 46692146
Alignment:
Q  316 agaaacacaaagcaaagt-gttaggagtagattctacccaagatttgttga 365  Q
    ||||||||||||||| || ||||||||||||||| | ||||||||||||||    
T  46692196 agaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttga 46692146  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 21677828 - 21677783
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatt 359  Q
    ||||||||||||||||||| ||||||| ||||||| ||||||||||    
T  21677828 gagaaacacaaagcaaagtagttaggaatagattcaacccaagatt 21677783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 52618515 - 52618560
Alignment:
Q  315 gagaaacacaaagcaaagt-gttaggagtagattctacccaagatt 359  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||    
T  52618515 gagaaacacaaagcaaggtagttaggagtagattcaacccaagatt 52618560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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