View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18725_low_5 (Length: 373)
Name: NF18725_low_5
Description: NF18725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18725_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 14248347 - 14248006
Alignment:
| Q |
13 |
atcatcaaaagacattgagtaaattctactgaattgaatattattggctttgtgcactcatcgtcacaatcgaacaaaattttcctagctagctaattca |
112 |
Q |
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| T |
14248347 |
atcaacaaaagacattgagtaaattctactgaattgaatattcttggctttgtgcactcatcgtcaccatcgaacaaaattttcctagctagctaattca |
14248248 |
T |
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| Q |
113 |
aacaattggacgtcttagaaagtagtcttaataacatagaatttgggacgaagggttgaaagttactcaaccatttgctcatgactgctaagcatgttga |
212 |
Q |
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| T |
14248247 |
aacaattggacgtcttagaaagtagtcttaataacatagaatttgggacgaagggttgaaagttactcaaccatttgctcatgactgctaagcatgttga |
14248148 |
T |
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| Q |
213 |
gttcctatcttagacttcatcttgctccatcccaataagggcgttgaccttggaaaggtcattttggagcctatcagagcaaatggggtgcaacacttag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14248147 |
gttcctatcttagacttcatcttgctccatcccaataagggcgttgaccttggaaaggtcattttggagcctatcagagcaaatggggcgcaacacttag |
14248048 |
T |
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| Q |
313 |
tacaggacgtgaacctacctacccagccacaagactcatctc |
354 |
Q |
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| T |
14248047 |
tacaggacgtgaacctacctccccagccacaagactcatctc |
14248006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 14263398 - 14263349
Alignment:
| Q |
210 |
tgagttcctatcttagacttcatcttgctccatcccaataagggcgttga |
259 |
Q |
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| T |
14263398 |
tgagttcctagtttagacttcatgttgctccatcccaattaggtcgttga |
14263349 |
T |
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