View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18725_low_6 (Length: 362)
Name: NF18725_low_6
Description: NF18725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18725_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 34370955 - 34371289
Alignment:
| Q |
11 |
cacagattcctctagcttctgaatcctccactctgccttttctgcaaagcacaacatcttctccttctgttctttactgaacttagttctagacctcttc |
110 |
Q |
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| T |
34370955 |
cacagattcctctagcttctgaatcctccactctgccttttctgcaaagcacaacatcttctccttctgttctttactgaacttagttctagacctcttc |
34371054 |
T |
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| Q |
111 |
ttaagtatcatcttttcggttcgattttccacatccttaatacaatctttctcataataagacttatcagaaggactagttgattcacttttgttgtttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34371055 |
ttaagtatcatcttttcggttcgattttccacatccttaataaaatctttctcataataagactgatcagaaggactagttgattcacttttgttgtttg |
34371154 |
T |
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| Q |
211 |
gagaaaaatgagccaagaaaggtacattaatgttatgatcaggaatcaatgaaagattagcataatgttgagaagggctattgaaatcagactctatttc |
310 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34371155 |
gagaaaaatgagccaagaaaggtgcattaatgttatgatcaggaatcagtgaaagattagcataatgttgagaagggctattgaaatcagactctatttc |
34371254 |
T |
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| Q |
311 |
ttttctgtggaagtttctatggcaattgcaagcac |
345 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
34371255 |
ttttctgtggaagtttctatggcaattgcaagcac |
34371289 |
T |
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