View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18725_low_9 (Length: 292)
Name: NF18725_low_9
Description: NF18725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18725_low_9 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 131 - 292
Target Start/End: Complemental strand, 14248479 - 14248319
Alignment:
| Q |
131 |
ggtaatttggcaattatactccgtgatcaaaaggacttttaggtaa-tatatcatgaacatcagtccgagtccattgactgcttccctttgattttctat |
229 |
Q |
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| T |
14248479 |
ggtaatttggcaattatactccgagatcaaaaggactt--aggtaaatatatcatgaacatcagtccgagttcattgactgcttccctttgattttctat |
14248382 |
T |
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| Q |
230 |
aacaataatctctattgactatattgagcagaacatcaacaaaagacattgagtaaattctac |
292 |
Q |
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| T |
14248381 |
aacaataagctctattgactatattgagcagaatatcaacaaaagacattgagtaaattctac |
14248319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 14248888 - 14248765
Alignment:
| Q |
13 |
gaacctgtgctaggagctctcacactctcctagtgaacctctcatcattttctccattggaccataatccaaaaccatgaataaccatttcatttcatca |
112 |
Q |
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| T |
14248888 |
gaacctctgctaggagctctcacactctcctagtgaacctctcatcattttctccattggaccataatccaaaaccatgaataaccatttcatttcatca |
14248789 |
T |
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| Q |
113 |
atctttgaactagaaaacggtaat |
136 |
Q |
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| T |
14248788 |
atctttgaactagaaaacggtaat |
14248765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 182
Target Start/End: Complemental strand, 14866262 - 14866132
Alignment:
| Q |
53 |
ctcatcattttctccattggaccataatccaaaaccatgaataaccatttcatttcatcaatctttgaactagaaaacggtaatttggcaattatactcc |
152 |
Q |
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| T |
14866262 |
ctcatcatcttttccattgaaccattatccgaagccttgaatagccccttcatctcatcaatcttggatgtagaaaacggtaatttcgcaagaatactcc |
14866163 |
T |
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| Q |
153 |
gtgatcaaaagga-cttttaggtaatatatc |
182 |
Q |
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| T |
14866162 |
ggggtaaaaacgaccttttaggtaatttatc |
14866132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 14234845 - 14234922
Alignment:
| Q |
53 |
ctcatcattttctccattggaccataatccaaaaccatgaataaccatttcatttcatcaatctttgaactagaaaac |
130 |
Q |
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| T |
14234845 |
ctcatcattttctctattgaaccattatccgaagccttgcataatggtttcatttcatcgatctttgaagtagaaaac |
14234922 |
T |
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