View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18727_high_14 (Length: 357)

Name: NF18727_high_14
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18727_high_14
NF18727_high_14
[»] chr3 (2 HSPs)
chr3 (1-349)||(43489819-43490167)
chr3 (257-321)||(45013921-45013985)
[»] chr8 (1 HSPs)
chr8 (207-349)||(38653101-38653243)
[»] chr6 (3 HSPs)
chr6 (207-349)||(13409913-13410055)
chr6 (256-319)||(4038752-4038815)
chr6 (257-327)||(10554652-10554722)
[»] chr1 (1 HSPs)
chr1 (208-338)||(44331736-44331866)
[»] chr4 (2 HSPs)
chr4 (260-320)||(1726250-1726310)
chr4 (260-312)||(2428679-2428731)
[»] chr2 (1 HSPs)
chr2 (260-312)||(44648686-44648738)
[»] chr7 (3 HSPs)
chr7 (257-319)||(3160284-3160346)
chr7 (285-327)||(6568948-6568990)
chr7 (285-327)||(6583107-6583149)


Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 43489819 - 43490167
Alignment:
Q  1 cacattatcatcataaatattccttggagcaggaatacccgaaaactgaaaacgatcataaaagtttgtcgaatgctgagaagagttaggaaaaggtcta 100  Q
    ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489819 cacattatcatcataaacattccttgcaggaggaatacccgaaaactgaaaacgatcataaaagtttgtcgaatgctgagaagagttaggaaaaggtcta 43489918  T
Q  101 gtatgaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaacgttccattgagtagtagtagtagctggtggagggttac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489919 gtatgaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaacgttccattgagtagtagtagtagctggtggagggttac 43490018  T
Q  201 gaagtgtaacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43490019 gaagtgtaacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagctgcttcagctgtttcaaa 43490118  T
Q  301 tgttcctaaccatactcttgctgctttgaatggatctcttatctctgct 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43490119 tgttcctaaccatactcttgctgctttgaatggatctcttatctctgct 43490167  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 45013921 - 45013985
Alignment:
Q  257 gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgc 321  Q
    |||||||||||||||||    || ||||| ||||| |||||||||||||||| |||||| |||||    
T  45013921 gcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagccatacccttgc 45013985  T

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Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 207 - 349
Target Start/End: Original strand, 38653101 - 38653243
Alignment:
Q  207 taacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcc 306  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||| |  | ||||| |||||| ||| |||| ||| ||||||||||||||||||| ||    
T  38653101 taacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggctttagctgcatcttcagctgtttcaaatgtacc 38653200  T
Q  307 taaccatactcttgctgctttgaatggatctcttatctctgct 349  Q
    ||||||||||||||  |||||||| ||||||||||||||||||    
T  38653201 taaccatactcttgtagctttgaaaggatctcttatctctgct 38653243  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 207 - 349
Target Start/End: Complemental strand, 13410055 - 13409913
Alignment:
Q  207 taacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcc 306  Q
    |||||||||||||||| |||||||| ||| || | ||||| || |  |  |||||||||||||| || ||||| |||||||| ||||| || ||||||||    
T  13410055 taacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcc 13409956  T
Q  307 taaccatactcttgctgctttgaatggatctcttatctctgct 349  Q
    || ||||||||||  |||||||  |||||||||||| ||||||    
T  13409955 tagccatactctttgtgctttgtgtggatctcttatttctgct 13409913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 4038815 - 4038752
Alignment:
Q  256 agcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactctt 319  Q
    |||||| |||||||| |||||||||||  |||||||||| ||||| ||||||||||| ||||||    
T  4038815 agcagcctcatcataagctctagcagcttcttcagctgtatcaaaagttcctaaccaaactctt 4038752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 10554722 - 10554652
Alignment:
Q  257 gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgctgcttt 327  Q
    |||||||||||||| ||  |||| |||||||||||||||||||| || || | ||| ||||||||| ||||    
T  10554722 gcagcttcatcataagcagtagctgcagcttcagctgtttcaaaggtgccaagccacactcttgctccttt 10554652  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 208 - 338
Target Start/End: Original strand, 44331736 - 44331866
Alignment:
Q  208 aacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcct 307  Q
    ||||||||||||||| |||||||| ||| |||| ||||| || |  |  ||||||||||| || ||||| || |||||||| || ||||||||||||||     
T  44331736 aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca 44331835  T
Q  308 aaccatactcttgctgctttgaatggatctc 338  Q
    | |||||||||||||||||||  ||||||||    
T  44331836 agccatactcttgctgctttgtgtggatctc 44331866  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 1726310 - 1726250
Alignment:
Q  260 gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttg 320  Q
    ||||||||||||||||| || ||| |||| ||||||||||||||||||||||||| |||||    
T  1726310 gcttcatcatatgctcttgctgcatcttctgctgtttcaaatgttcctaaccatattcttg 1726250  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 2428679 - 2428731
Alignment:
Q  260 gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaacca 312  Q
    |||||||||||||||||||| ||  |||||||||| |||||||||||||||||    
T  2428679 gcttcatcatatgctctagctgcttcttcagctgtctcaaatgttcctaacca 2428731  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 44648686 - 44648738
Alignment:
Q  260 gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaacca 312  Q
    ||||||||||||||| |||| ||  ||||||||||||||||||||||||||||    
T  44648686 gcttcatcatatgctttagctgcttcttcagctgtttcaaatgttcctaacca 44648738  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 3160346 - 3160284
Alignment:
Q  257 gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactctt 319  Q
    |||||||||||||| ||||| |||||  |||||||||| ||||| ||||||||||| ||||||    
T  3160346 gcagcttcatcataggctcttgcagcttcttcagctgtatcaaaagttcctaaccaaactctt 3160284  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 6568990 - 6568948
Alignment:
Q  285 cttcagctgtttcaaatgttcctaaccatactcttgctgcttt 327  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||    
T  6568990 cttcagctgtatcaaatgttcctaaccaaactctagctgcttt 6568948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 6583149 - 6583107
Alignment:
Q  285 cttcagctgtttcaaatgttcctaaccatactcttgctgcttt 327  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||    
T  6583149 cttcagctgtgtcaaatgttcctaaccaaactctagctgcttt 6583107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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