View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_high_20 (Length: 312)
Name: NF18727_high_20
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_high_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 41329517 - 41329222
Alignment:
| Q |
18 |
gtttccctaacaaattttaatgattacaatatgttagtggtgttggaatctaattccctgtctgttttgacaggttactgcnnnnnnn-cctctcatttt |
116 |
Q |
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| T |
41329517 |
gtttccctaacaaattttaatgattacaatatgttagtggtgttggaatctaattccctgtctgttttgacaggttactgcttttttttcctctcatttt |
41329418 |
T |
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| Q |
117 |
tatgtgaaaagcttacaacttcattttgcgaaattttagtaggaaagaccctaaaatggcagctttaaccctacacactcacattgtagagagaatgata |
216 |
Q |
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| T |
41329417 |
tatgtgaaaagcttacaacttcattttgcgaaattttagtaggaaagaccctaaaatggcagctttaaccctacacactcacattgtagagagaatgata |
41329318 |
T |
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| Q |
217 |
aataataaaccattaaaggtagccatgcacgtgcatgaaaaagaaaatgaaagtgggacctacctagttgcattgcatgaagaaatgcatccccac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41329317 |
aataataaaccattaaaggtagccatgcacgtgcatgaaaaagaaaatgaaagtgggacctacctagttgcattgcatgaagaaatgcatccccac |
41329222 |
T |
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