View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_high_25 (Length: 288)
Name: NF18727_high_25
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 5569120 - 5569378
Alignment:
| Q |
10 |
aagaatatggtgaagaaatggtaccacatatgcagctgatgtgtcaaaaaatgtgacacatcatcacaactagtagaataatagatgtcaataaactgat |
109 |
Q |
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| T |
5569120 |
aagaatatggtgaataaatggtaccacatatgcagctgatttgtcaaaaaatgtgacacatcatcacaactagtagaataatagatgtcaataaactgat |
5569219 |
T |
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| Q |
110 |
taactaagtgattcaagaagnnnnnnnnnnnnnnnnaattcattcagagattattgtgacaccgcatgtcattcttccagacaaaagtggttgtttactc |
209 |
Q |
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| T |
5569220 |
taactaagtgattcaagaag--ttttatttttttttaattcattcagagattattgtgacaccgcatgtcattcttcgagacaaaagtggttgtttactc |
5569317 |
T |
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| Q |
210 |
cttaaaaatcatcacatgtctaatgaaaaatatattttttggatagttaggagagaggact |
270 |
Q |
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| T |
5569318 |
cttaaaaatcatcacatgtctcctgaaaaatatattttttggatagtcaggagagatgact |
5569378 |
T |
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