View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_high_28 (Length: 278)
Name: NF18727_high_28
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 38833290 - 38833516
Alignment:
| Q |
18 |
tgatgaacaaagtgagggagcaatgtgggacttgactcttatctctatgtccctataagtctgcatttcatgtgctagctagatctacttttgggatcac |
117 |
Q |
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| T |
38833290 |
tgatgaactaaccgagggagcaatgtgggacttgactcttatctctatgtccctataagtctgcatttcatgtgctagctagatctacttttgggatcac |
38833389 |
T |
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| Q |
118 |
gagatttctatttattttatctgtctactcttctcaaagctaatgaactgggacacacatcatgtgccaccgtgaaaagctgagactaattaacaattca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38833390 |
gagatttctatttattttatctgtctactcttctcaaagctaatgaactgcgacacacatcatgtgccaccgtgaaaagctgagactaataaacaattca |
38833489 |
T |
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| Q |
218 |
attttgcatattgccacaaaacaaata |
244 |
Q |
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|||||||||| ||||||||||||||| |
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| T |
38833490 |
attttgcataaagccacaaaacaaata |
38833516 |
T |
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