View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18727_high_29 (Length: 276)
Name: NF18727_high_29
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_high_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 31 - 234
Target Start/End: Complemental strand, 38876991 - 38876792
Alignment:
| Q |
31 |
atttgcaatatatagttgttgagcttaattaacttgtgtttaataatttgaatgacatgcagtgacgacttgagagctctatttgaaagagcaaaagcaa |
130 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
38876991 |
atttgcaatatatagttgttgaccttaa----cttgtgtttaataatttgaatgacatgcagtgaggacctgagagctctatttgaaagagcaaaagcaa |
38876896 |
T |
|
| Q |
131 |
aactgagatttaatcttgaaagcatgaatgaaccatggttgattaaggatataacaagagcatgggaaagttgtgttaaagatgcaattcttgattatga |
230 |
Q |
| |
|
| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38876895 |
agctgagatttaatcttgaaagcatgaacgaaacatggttgattaaggatataacaagagcatgggaaagttgtgttaaagatgcaattcttgattatga |
38876796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 25 - 255
Target Start/End: Complemental strand, 16628168 - 16627942
Alignment:
| Q |
25 |
gattatatttgcaatatatagttgttgagcttaattaacttgtgtttaataatttgaatgacatgcagtgacgacttgagagctctatttgaaagagcaa |
124 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||| ||||||| ||||||||||| ||||||||||| ||||| |||| | | ||||| ||||||| |
|
|
| T |
16628168 |
gattatatttgcaatatataattgttgaccataata----tgtgtttcataatttgaattacatgcagtgaggactttagagatttgtttgagagagcaa |
16628073 |
T |
|
| Q |
125 |
aagcaaaactgagatttaatcttgaaagcatgaatgaaccatggttgattaaggatataacaagagcatgggaaagttgtgttaaagatgcaattcttga |
224 |
Q |
| |
|
||| ||| |||||| ||||||| ||||||||||| |||||||||||||||||||| || | |||||||||||| |||||| || ||| ||||| ||||| |
|
|
| T |
16628072 |
aaggaaagctgagagttaatctggaaagcatgaagcaaccatggttgattaaggatgtagctagagcatgggaaggttgtgctagagaagcaatccttga |
16627973 |
T |
|
| Q |
225 |
ttatgaacaggctattggtggggggacattt |
255 |
Q |
| |
|
|||| ||| | || |||||| || |||||| |
|
|
| T |
16627972 |
atatgcacatgttaatggtggtggaacattt |
16627942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 25 - 255
Target Start/End: Complemental strand, 16637049 - 16636823
Alignment:
| Q |
25 |
gattatatttgcaatatatagttgttgagcttaattaacttgtgtttaataatttgaatgacatgcagtgacgacttgagagctctatttgaaagagcaa |
124 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||| ||||||| ||||||||||| ||||||||||| ||||| |||| | | ||||| ||||||| |
|
|
| T |
16637049 |
gattatatttgcaatatataattgttgaccataata----tgtgtttcataatttgaattacatgcagtgaggactttagagatttgtttgagagagcaa |
16636954 |
T |
|
| Q |
125 |
aagcaaaactgagatttaatcttgaaagcatgaatgaaccatggttgattaaggatataacaagagcatgggaaagttgtgttaaagatgcaattcttga |
224 |
Q |
| |
|
||| ||| |||||| ||||||| ||||||||||| |||||||||||||||||||| || | |||||||||||| |||||| || ||| ||||| ||||| |
|
|
| T |
16636953 |
aaggaaagctgagagttaatctggaaagcatgaagcaaccatggttgattaaggatgtagctagagcatgggaaggttgtgctagagaagcaatccttga |
16636854 |
T |
|
| Q |
225 |
ttatgaacaggctattggtggggggacattt |
255 |
Q |
| |
|
|||| ||| | || |||||| || |||||| |
|
|
| T |
16636853 |
atatgcacatgttaatggtggtggaacattt |
16636823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 16616076 - 16615844
Alignment:
| Q |
18 |
gatgatggattatatttgcaatatatagttgttgagcttaattaacttgtgtttaataatttgaatgacatgcagtgacgacttgagagctctatttgaa |
117 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||| | ||||| ||||||| ||||||||| | ||||||||||| ||| |||||||||| ||||| |
|
|
| T |
16616076 |
gatgatggacaatatttgcaatgtatagctgttgaccataatt----tgtgtttcataatttgatt-acatgcagtgatgacctgagagctctttttgag |
16615982 |
T |
|
| Q |
118 |
agagcaaaagcaaaactgagatttaatcttgaaagcatgaatgaaccatggttgattaaggatataacaagagcatgggaaagttgtgttaaagatgcaa |
217 |
Q |
| |
|
| |||||||||||| |||||| |||| || |||||| ||| |||||||||||||||||||| || | |||||||||||| |||||| || ||| |||| |
|
|
| T |
16615981 |
aaagcaaaagcaaagctgagacttaaactgcaaagcacgaagcaaccatggttgattaaggatgtagctagagcatgggaaggttgtgctagagaagcaa |
16615882 |
T |
|
| Q |
218 |
ttcttgattatgaacaggctattggtggggggacattt |
255 |
Q |
| |
|
| ||||| |||| ||| |||| |||||| || |||||| |
|
|
| T |
16615881 |
tccttgaatatgcacatgctaatggtggtggaacattt |
16615844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University