View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18727_high_34 (Length: 257)

Name: NF18727_high_34
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18727_high_34
NF18727_high_34
[»] chr3 (1 HSPs)
chr3 (42-243)||(3650806-3651001)
[»] chr4 (3 HSPs)
chr4 (172-216)||(4466851-4466895)
chr4 (124-208)||(3272483-3272565)
chr4 (110-211)||(52732973-52733077)
[»] chr8 (2 HSPs)
chr8 (143-200)||(2614938-2614995)
chr8 (117-217)||(32958169-32958267)
[»] chr7 (3 HSPs)
chr7 (109-207)||(31796153-31796247)
chr7 (167-211)||(25078284-25078328)
chr7 (111-159)||(25079148-25079196)
[»] chr5 (1 HSPs)
chr5 (164-216)||(3289694-3289746)
[»] chr1 (1 HSPs)
chr1 (164-208)||(46815435-46815479)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 243
Target Start/End: Original strand, 3650806 - 3651001
Alignment:
Q  42 aaaatgtcccacattacttataattgtaaaggaagaggcagactaagacnnnnnnnnnnnnnnnnnngactttagttcttctttacaagatgcaccagtc 141  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||    
T  3650806 aaaatgtctcacattacttataattgtaaaggaagaggcagactaagactatatatatgta------gactttagttcttctttacaagatgcaccagtc 3650899  T
Q  142 aaaaacactttaagcttggatatgactttcttcttttctcttgtactcttgtcttagaatgttgtgagatatagtcatggatttgcttttgatgatgtgg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3650900 aaaaacactttaagcttggatatgactttcttcttttctcttgtactcttgtcttagaatgttgtgagatatagttatggatttgcttttgatgatgtgg 3650999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 4466851 - 4466895
Alignment:
Q  172 ttcttttctcttgtactcttgtcttagaatgttgtgagatatagt 216  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  4466851 ttcttttctcttttactcttgtcttagaatgttgtgagatgtagt 4466895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 3272483 - 3272565
Alignment:
Q  124 ttacaagatgcaccagtcaaaaacactttaagcttggatatgactttcttcttttctcttgtactcttgtcttagaatgttgtga 208  Q
    |||||||||||| |||||||||| ||||||| |||| |  ||| |||||| ||||||||| |||| |||||||| ||||||||||    
T  3272483 ttacaagatgcatcagtcaaaaatactttaaacttgtaattgattttctt-ttttctcttatact-ttgtcttaaaatgttgtga 3272565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 52732973 - 52733077
Alignment:
Q  110 actttagttcttctttacaagatgcaccagtcaaaaacactttaagcttggatatgac---tttcttcttttctcttgtactcttgtcttagaatgttgt 206  Q
    |||||| |||||  ||| ||||||||||| | |||||||||||||| ||| |||| ||   ||| ||||||| |||  ||| ||||||||||| ||||||    
T  52732973 actttatttctttgttataagatgcaccaataaaaaacactttaagtttgtatattacctttttattcttttatctaatacccttgtcttagattgttgt 52733072  T
Q  207 gagat 211  Q
    |||||    
T  52733073 gagat 52733077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 2614995 - 2614938
Alignment:
Q  143 aaaacactttaagcttggatatgactttcttcttttctcttgtactcttgtcttagaa 200  Q
    |||||| ||||| |||| || ||||||| |||||||||||| ||||||| ||||||||    
T  2614995 aaaacattttaaacttgtatctgacttttttcttttctcttatactcttttcttagaa 2614938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 32958169 - 32958267
Alignment:
Q  117 ttcttctttacaagatgcaccagtcaaaaacactttaagcttggatatgactttcttcttttctcttgtactcttgtcttagaatgttgtgagatatagt 216  Q
    |||||| |||||| |||||| |||| ||||||||||||||||  |||  ||||| |||||||||||| | || ||| ||||| || ||||||||| ||||    
T  32958169 ttcttcgttacaatatgcacaagtcgaaaacactttaagcttctatacaacttt-ttcttttctcttattctattgccttag-attttgtgagatgtagt 32958266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 31796247 - 31796153
Alignment:
Q  109 gactttagttcttctttacaagatgcaccagtcaaaaacactttaagcttggatatgactttcttcttttctcttgtactcttgtcttagaatgttgtg 207  Q
    ||||||| |||||  ||| |||||||| || | |||||||||||||||||| || ||    |||| ||||||||| ||| ||| |||||||||||||||    
T  31796247 gactttatttctttgttataagatgcaacaattaaaaacactttaagcttgtatttg----tctttttttctcttatacccttttcttagaatgttgtg 31796153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 25078284 - 25078328
Alignment:
Q  167 ctttcttcttttctcttgtactcttgtcttagaatgttgtgagat 211  Q
    |||| ||||| |||||| ||||||||||||||| |||||||||||    
T  25078284 cttttttcttctctcttatactcttgtcttagagtgttgtgagat 25078328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 25079148 - 25079196
Alignment:
Q  111 ctttagttcttctttacaagatgcaccagtcaaaaacactttaagcttg 159  Q
    |||||||||||  |||||||||||| |  ||||||||||||||||||||    
T  25079148 ctttagttcttagttacaagatgcatcgatcaaaaacactttaagcttg 25079196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 3289694 - 3289746
Alignment:
Q  164 tgactttcttcttttctcttgtactcttgtcttagaatgttgtgagatatagt 216  Q
    ||||||| |||||||||||||  ||||| ||||||| ||||||||||| ||||    
T  3289694 tgacttttttcttttctcttgcgctcttttcttagagtgttgtgagatgtagt 3289746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 46815435 - 46815479
Alignment:
Q  164 tgactttcttcttttctcttgtactcttgtcttagaatgttgtga 208  Q
    ||||||||||||||||| |||||||||| | ||||| ||||||||    
T  46815435 tgactttcttcttttctattgtactcttatgttagagtgttgtga 46815479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University