View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_high_37 (Length: 246)
Name: NF18727_high_37
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 29564864 - 29565092
Alignment:
| Q |
1 |
atatattttacgtaactttctatcttgtttgtctccctcaagaacaataggactgagattctcttgggtttctcattgtgtcgtccattatacat--tga |
98 |
Q |
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| T |
29564864 |
atatattttacgtaactttctatcttgtttgtctccctcaagaacaataggactgagattctcttgggtttctcattgtgtc---cattatacatattga |
29564960 |
T |
|
| Q |
99 |
tggcttaattatacgacataaatagctggagcaagtaatatttggaccaacatgcatgtttaaatatatacacagacacgagacggaacgtgtatcaaga |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29564961 |
tggcttaattatacgacataaatagctggagcaagtaatatttggaccaacatgcatgtttaaatatatacacagacacgagacggaacgtgtatcaaga |
29565060 |
T |
|
| Q |
199 |
acacaggtgtgcttaattacacttccgatttc |
230 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
29565061 |
acacaggtgtgcttaattacacttccgatttc |
29565092 |
T |
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