View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_high_4 (Length: 544)
Name: NF18727_high_4
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 33268263 - 33268504
Alignment:
| Q |
10 |
catcatcatattataaactttaaagtgagaaattaaatatctaacattcttctttgctgtannnnnnnctctcctttgcactttcctcctccttgtgatt |
109 |
Q |
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| T |
33268263 |
catcatcatattataaactttaaagtgagaaattaaatatctaagattcttctttgctgtatttttttctctcctttgcactttcctcctccttgtgatt |
33268362 |
T |
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| Q |
110 |
ttcatttgcagcacatatagaagatgagagagataataagtattcatattggacaagctggaattcaagtagggaattcatgttgggagctttattgtct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33268363 |
ttcatttgcagcacatatagaagatgagagagataataagtattcatattggacaagctggaattcaagtagggaattcatgttgggagctttattgtct |
33268462 |
T |
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| Q |
210 |
tgagcatggaattcaacctgatggattgatgcctaggtacac |
251 |
Q |
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| T |
33268463 |
tgagcatggaattcaacctgatggattgatgcctaggtacac |
33268504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 319 - 487
Target Start/End: Original strand, 33268572 - 33268742
Alignment:
| Q |
319 |
acttaatatgaaattggtttgacannnnnnn--gtcttctgctgtaagaaagctcaatttgttgactttgaatataagaaagcttaatttagttgatttt |
416 |
Q |
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| T |
33268572 |
acttaatatgaaattggtttgacattttttattgtcttctgctgtaagaaagctcaatttgttgactttgaatataagaaagcttaatttagttgatttt |
33268671 |
T |
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| Q |
417 |
tcaagttaattgtcttgtttagttagatggaatcctaaaattttatatatttcctaatagttccttctggg |
487 |
Q |
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| T |
33268672 |
tcaagttaattgtcttgtttagttagatgcaatcctaaaattttatatatttcctaatagttccttctggg |
33268742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 128 - 234
Target Start/End: Complemental strand, 10034576 - 10034470
Alignment:
| Q |
128 |
agaagatgagagagataataagtattcatattggacaagctggaattcaagtagggaattcatgttgggagctttattgtcttgagcatggaattcaacc |
227 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
10034576 |
agaaaatgagagagataataagcattcatattggacaagctggaattcaggttggtaattcatgttgggagctatattgtcttgaacatggcattcaacc |
10034477 |
T |
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| Q |
228 |
tgatgga |
234 |
Q |
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||||||| |
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| T |
10034476 |
tgatgga |
10034470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 35670764 - 35670650
Alignment:
| Q |
133 |
atgagagagataataagtattcatattggacaagctggaattcaagtagggaattcatgttgggagctttattgtcttgagcatggaattcaacctgatg |
232 |
Q |
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|||||||| || || |||||||| || || ||||| ||||| ||||| || ||||| || ||||||||||| ||||| || ||||| ||||| ||||| | |
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| T |
35670764 |
atgagagaaattatcagtattcacatcggtcaagccggaatccaagtcggtaattcttgctgggagctttactgtctcgaacatggcattcagcctgacg |
35670665 |
T |
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| Q |
233 |
gattgatgcctaggt |
247 |
Q |
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| T |
35670664 |
gcatgatgcctaggt |
35670650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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