View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_high_50 (Length: 219)
Name: NF18727_high_50
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_high_50 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 11051106 - 11050887
Alignment:
| Q |
1 |
taacacctactattattttctaaagtgcttggaataaaaaa-ctaaagaagaaacaattttataaaatactttgttcctgttatgcatcccacaattctt |
99 |
Q |
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| T |
11051106 |
taacacctactattattt-ctaaagtgcttggaataaaaaaactaaagaaaaaacaattttataaaatactttgttcctgttacgcatcccacaattctt |
11051008 |
T |
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| Q |
100 |
tttcaaataaccattcacgtacatatttatattgatcatcatcatgaattaaaaga-taaccatacaatggtaactggtaatgagttttgtaacaagaac |
198 |
Q |
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| T |
11051007 |
tttcaaataaccattcacgtacatatttatattgatcatcatcatgaattaaaagacaaaccatacaatggtaactggtaataagttttgtaacaagaac |
11050908 |
T |
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| Q |
199 |
aattggcacaaacagtctatt |
219 |
Q |
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| T |
11050907 |
aattggcacaaagagtctatt |
11050887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 10218984 - 10218934
Alignment:
| Q |
161 |
atacaatggtaactggtaatgagttttgtaacaagaacaattggcacaaac |
211 |
Q |
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|||||||| |||||| |||| |||||||||||||||||||||||||||||| |
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| T |
10218984 |
atacaatgataactgataataagttttgtaacaagaacaattggcacaaac |
10218934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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