View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18727_high_7 (Length: 457)

Name: NF18727_high_7
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18727_high_7
NF18727_high_7
[»] chr4 (3 HSPs)
chr4 (205-406)||(44590348-44590548)
chr4 (8-173)||(44590548-44590713)
chr4 (110-193)||(11842419-11842503)
[»] chr8 (4 HSPs)
chr8 (92-227)||(38198080-38198215)
chr8 (110-224)||(30581859-30581973)
chr8 (110-156)||(11521554-11521600)
chr8 (120-158)||(11521649-11521687)
[»] chr6 (1 HSPs)
chr6 (124-193)||(6695070-6695138)
[»] chr7 (1 HSPs)
chr7 (92-156)||(19261872-19261936)
[»] chr3 (3 HSPs)
chr3 (110-161)||(25180037-25180089)
chr3 (110-156)||(54996731-54996777)
chr3 (92-156)||(44302811-44302875)
[»] chr2 (2 HSPs)
chr2 (110-162)||(14196746-14196798)
chr2 (114-156)||(44966762-44966804)
[»] chr1 (2 HSPs)
chr1 (122-155)||(48326854-48326887)
chr1 (110-169)||(11045465-11045525)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 205 - 406
Target Start/End: Complemental strand, 44590548 - 44590348
Alignment:
Q  205 aattcgttttagaaaacattttagtgtattcataaattagaaaaggaaaatatgatcttaccgtccttcctctcataaatccttcactataatatactcc 304  Q
    |||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44590548 aattcgttttagaaaacattttagagtgttcgtaaattagaaaaggaaaatatgatcttaccgtccttcctctcataaatccttcactataacatactcc 44590449  T
Q  305 aagactttgtttgtgagtttggaatgtaatggaggagaggacattgagaaaaggaatgagcaaataaacttgcattgctaattcgtcaattatcatgtac 404  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44590448 aggactttgtttgtgagtttggaatgtaatggaggagaggacattgagaaaaggaatgagcaaataaacttgcattgctaattcgtc-attatcatgtac 44590350  T
Q  405 tc 406  Q
    ||    
T  44590349 tc 44590348  T

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Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 44590713 - 44590548
Alignment:
Q  8 cgaagaatatagcaaagaaaaaggcataagaaggaagaatttttcttgcagattcacaacatatacctaaacaaaccaatagaattttggagaggatggc 107  Q
    |||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  44590713 cgaaaaatatagcaaagaaaaaggcataagaaggaagagttttgcttgcagattcacaacatatacctaaacaaaccaataaaattttgtagaggatggc 44590614  T
Q  108 tatggagggcttagtctatattttgaaatataattgatatttttaaaaattaaaactacaacgtaa 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44590613 tatggagggcttagtctatattttgaaatataattgatatttttaaaaattaaaattacaacgtaa 44590548  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 11842503 - 11842419
Alignment:
Q  110 tggagggcttagtctatattttgaaatataattgatattttta-aaaattaaaactacaacgtaataaattatgatataatactt 193  Q
    ||||||| | ||||||||||||||||||| ||||||||||||| |||||| ||| |||||  | |||||| || |||||||||||    
T  11842503 tggagggttaagtctatattttgaaatattattgatatttttaaaaaattgaaattacaatatgataaatgatcatataatactt 11842419  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 92 - 227
Target Start/End: Original strand, 38198080 - 38198215
Alignment:
Q  92 ttttggagaggatggctatggagggcttagtctatattttgaaatataattgatatttttaaaaattaaaactacaacgtaataaattatgatataatac 191  Q
    |||||||| |||||||| ||||||||| |||||||| ||| ||||| |  ||||||||||||||||| |||  ||||| | ||| || || |||||||||    
T  38198080 ttttggaggggatggctttggagggctaagtctatactttaaaatacatctgatatttttaaaaattgaaataacaacatgatatatgatcatataatac 38198179  T
Q  192 tttgttcacacttaattcgttttagaaaacatttta 227  Q
    ||   ||||||||||||| ||||| |||||| ||||    
T  38198180 ttcaatcacacttaattcattttaaaaaacacttta 38198215  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 30581859 - 30581973
Alignment:
Q  110 tggagggcttagtctatattttgaaatataattgatatttttaa-aaattaaaactacaacgtaataaattatgatataatactttgttcacacttaatt 208  Q
    ||||||||| ||||||||||||||||||||||||||||||  || ||||| ||| |||||| | |||||| || |||||||||||   ||||||||||||    
T  30581859 tggagggctaagtctatattttgaaatataattgatatttaaaagaaattgaaa-tacaacatgataaatgatcatataatacttcaatcacacttaatt 30581957  T
Q  209 cgttttagaaaacatt 224  Q
     |||||| || |||||    
T  30581958 tgttttaaaacacatt 30581973  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 11521554 - 11521600
Alignment:
Q  110 tggagggcttagtctatattttgaaatataattgatatttttaaaaa 156  Q
    |||| |||| ||||||||||||||||| || ||||||||||||||||    
T  11521554 tggaaggctaagtctatattttgaaatctatttgatatttttaaaaa 11521600  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 11521687 - 11521649
Alignment:
Q  120 agtctatattttgaaatataattgatatttttaaaaatt 158  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  11521687 agtctatattttgaaatatatttgatattttaaaaaatt 11521649  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 6695138 - 6695070
Alignment:
Q  124 tatattttgaaatataattgatatttttaaaaattaaaactacaacgtaataaattatgatataatactt 193  Q
    ||||||||||||||||||||||| ||||||||||  ||| |||||| | |||||| || |||||||||||    
T  6695138 tatattttgaaatataattgata-ttttaaaaatagaaattacaacatgataaatgatcatataatactt 6695070  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 19261872 - 19261936
Alignment:
Q  92 ttttggagaggatggctatggagggcttagtctatattttgaaatataattgatatttttaaaaa 156  Q
    |||||||| ||| ||||  |||||||  |||||||||||| ||||||| ||||||||||||||||    
T  19261872 ttttggaggggagggcttcggagggcaaagtctatattttcaaatatatttgatatttttaaaaa 19261936  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 25180089 - 25180037
Alignment:
Q  110 tggagggcttagtctatattttgaaatataattgatattttt-aaaaattaaa 161  Q
    ||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||    
T  25180089 tggagggctaagtctatatcttgaaatatatttgatatttttcaaaaattaaa 25180037  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 54996731 - 54996777
Alignment:
Q  110 tggagggcttagtctatattttgaaatataattgatatttttaaaaa 156  Q
    |||| |||| |||||||||||||||||||| |||||||||| |||||    
T  54996731 tggaaggctaagtctatattttgaaatatatttgatattttaaaaaa 54996777  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 44302875 - 44302811
Alignment:
Q  92 ttttggagaggatggctatggagggcttagtctatattttgaaatataattgatatttttaaaaa 156  Q
    |||||||| |||||||| |  |||||| |||||||||||||| ||||| ||||| |||| |||||    
T  44302875 ttttggaggggatggctttatagggctaagtctatattttgatatatatttgatgttttaaaaaa 44302811  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 14196746 - 14196798
Alignment:
Q  110 tggagggcttagtctatattttgaaatataattgatatttttaaaaattaaaa 162  Q
    ||||||||| ||||||||| ||||||||||||||||||||  |||||| ||||    
T  14196746 tggagggctaagtctatatcttgaaatataattgatatttaaaaaaataaaaa 14196798  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 44966804 - 44966762
Alignment:
Q  114 gggcttagtctatattttgaaatataattgatatttttaaaaa 156  Q
    ||||| |||||||||||||||||||| ||||| ||||||||||    
T  44966804 gggctaagtctatattttgaaatatatttgatgtttttaaaaa 44966762  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 48326887 - 48326854
Alignment:
Q  122 tctatattttgaaatataattgatatttttaaaa 155  Q
    |||||||||||||||||| |||||||||||||||    
T  48326887 tctatattttgaaatatatttgatatttttaaaa 48326854  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 11045525 - 11045465
Alignment:
Q  110 tggagggcttagtctatattttgaaatataattgatatttt-taaaaattaaaactacaac 169  Q
    |||||| || |||||||||||||| ||||| ||||||||||  |||||||||||| |||||    
T  11045525 tggaggactaagtctatattttgatatatatttgatattttaaaaaaattaaaacaacaac 11045465  T

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