View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18727_low_1 (Length: 806)

Name: NF18727_low_1
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18727_low_1
NF18727_low_1
[»] chr2 (19 HSPs)
chr2 (127-450)||(16311598-16311916)
chr2 (514-787)||(16311973-16312236)
chr2 (235-434)||(32502816-32503016)
chr2 (270-439)||(22191423-22191594)
chr2 (127-212)||(45049536-45049621)
chr2 (353-435)||(39760375-39760457)
chr2 (517-591)||(41554301-41554375)
chr2 (139-215)||(20103544-20103621)
chr2 (353-416)||(17658798-17658861)
chr2 (235-337)||(8033659-8033760)
chr2 (235-408)||(8033761-8033927)
chr2 (251-336)||(8033572-8033657)
chr2 (133-200)||(5243259-5243326)
chr2 (248-311)||(17658898-17658961)
chr2 (270-336)||(17658817-17658883)
chr2 (260-314)||(33939948-33940002)
chr2 (3-32)||(16311477-16311506)
chr2 (367-420)||(26407676-26407729)
chr2 (365-434)||(32013984-32014053)
[»] chr1 (22 HSPs)
chr1 (239-410)||(845016-845188)
chr1 (352-435)||(27293283-27293366)
chr1 (350-435)||(38783895-38783980)
chr1 (249-305)||(40649911-40649967)
chr1 (132-211)||(3417350-3417429)
chr1 (270-435)||(10595412-10595577)
chr1 (156-209)||(11440864-11440917)
chr1 (289-432)||(7790340-7790483)
chr1 (169-212)||(8314018-8314061)
chr1 (352-435)||(10377539-10377622)
chr1 (269-336)||(34835628-34835695)
chr1 (130-215)||(22544157-22544243)
chr1 (270-336)||(46410686-46410752)
chr1 (127-200)||(8314015-8314088)
chr1 (382-435)||(28504714-28504767)
chr1 (270-397)||(40649818-40649946)
chr1 (140-199)||(11440835-11440894)
chr1 (270-305)||(46410826-46410861)
chr1 (270-336)||(17347206-17347272)
chr1 (353-435)||(31063255-31063335)
chr1 (353-435)||(40649780-40649862)
chr1 (353-434)||(15395197-15395278)
[»] chr8 (33 HSPs)
chr8 (132-212)||(287364-287444)
chr8 (248-434)||(29490376-29490563)
chr8 (127-212)||(10895906-10895991)
chr8 (354-416)||(32029634-32029696)
chr8 (270-403)||(23768800-23768935)
chr8 (133-200)||(16291970-16292037)
chr8 (270-426)||(21136599-21136756)
chr8 (382-434)||(10028655-10028707)
chr8 (132-215)||(23136498-23136582)
chr8 (128-212)||(23161052-23161136)
chr8 (169-212)||(287403-287446)
chr8 (127-200)||(17895017-17895090)
chr8 (251-315)||(32029529-32029594)
chr8 (139-215)||(35136740-35136817)
chr8 (140-200)||(10895879-10895939)
chr8 (387-434)||(10028747-10028794)
chr8 (133-200)||(12167179-12167246)
chr8 (133-200)||(12411607-12411674)
chr8 (161-212)||(15624334-15624385)
chr8 (161-212)||(15624517-15624568)
chr8 (161-212)||(15648122-15648173)
chr8 (161-212)||(15648305-15648356)
chr8 (169-212)||(17895020-17895063)
chr8 (167-213)||(4930229-4930275)
chr8 (130-200)||(8362365-8362435)
chr8 (139-212)||(17890880-17890954)
chr8 (130-215)||(18666835-18666921)
chr8 (366-412)||(38225706-38225752)
chr8 (130-215)||(45250996-45251082)
chr8 (1-31)||(45531517-45531547)
chr8 (167-212)||(25113392-25113437)
chr8 (139-207)||(40267326-40267394)
chr8 (178-215)||(45531668-45531705)
[»] chr7 (10 HSPs)
chr7 (515-611)||(21420959-21421055)
chr7 (249-314)||(42710041-42710106)
chr7 (270-398)||(42709958-42710086)
chr7 (130-215)||(29494020-29494106)
chr7 (270-406)||(30935240-30935377)
chr7 (270-435)||(12427836-12428002)
chr7 (353-435)||(42709920-42710002)
chr7 (248-289)||(33384192-33384233)
chr7 (272-313)||(26752010-26752051)
chr7 (350-403)||(35660958-35661011)
[»] chr4 (26 HSPs)
chr4 (249-422)||(55264521-55264695)
chr4 (127-212)||(24071-24156)
chr4 (235-305)||(44137497-44137567)
chr4 (361-434)||(44137393-44137466)
chr4 (139-215)||(18066733-18066809)
chr4 (270-371)||(55264438-55264541)
chr4 (270-331)||(21782177-21782238)
chr4 (248-407)||(39051219-39051376)
chr4 (270-371)||(44137430-44137531)
chr4 (515-611)||(19718188-19718284)
chr4 (517-611)||(55248340-55248434)
chr4 (270-315)||(13119232-13119277)
chr4 (172-212)||(13914737-13914777)
chr4 (127-194)||(14288141-14288208)
chr4 (169-212)||(14288144-14288187)
chr4 (270-317)||(55264623-55264670)
chr4 (365-416)||(56087768-56087819)
chr4 (353-407)||(13119375-13119429)
chr4 (133-187)||(13914737-13914791)
chr4 (167-213)||(13923285-13923331)
chr4 (251-285)||(21782261-21782295)
chr4 (270-336)||(33614356-33614422)
chr4 (382-424)||(35004509-35004551)
chr4 (365-415)||(55264420-55264470)
chr4 (270-315)||(13119374-13119419)
chr4 (178-215)||(35648005-35648042)
[»] scaffold0018 (1 HSPs)
scaffold0018 (132-212)||(67241-67321)
[»] chr3 (28 HSPs)
chr3 (248-435)||(20124132-20124319)
chr3 (248-405)||(33428919-33429076)
chr3 (354-416)||(49782193-49782255)
chr3 (127-215)||(20919302-20919390)
chr3 (127-215)||(20928264-20928352)
chr3 (127-215)||(37197863-37197951)
chr3 (235-335)||(47337175-47337275)
chr3 (127-212)||(6440852-6440937)
chr3 (249-435)||(51862438-51862623)
chr3 (373-435)||(27812208-27812270)
chr3 (353-435)||(48338314-48338396)
chr3 (251-305)||(48338447-48338501)
chr3 (353-435)||(55446949-55447031)
chr3 (382-435)||(39840662-39840715)
chr3 (236-315)||(1163495-1163574)
chr3 (352-434)||(28860494-28860576)
chr3 (127-200)||(6445161-6445234)
chr3 (353-401)||(20124047-20124095)
chr3 (169-212)||(6445164-6445207)
chr3 (270-313)||(42045897-42045940)
chr3 (352-435)||(49547695-49547778)
chr3 (353-435)||(39840886-39840968)
chr3 (270-336)||(55446987-55447053)
chr3 (269-314)||(20124238-20124283)
chr3 (127-200)||(37187491-37187564)
chr3 (169-210)||(37187520-37187561)
chr3 (270-315)||(42045812-42045857)
chr3 (270-315)||(55447175-55447220)
[»] scaffold0154 (2 HSPs)
scaffold0154 (249-314)||(6108-6173)
scaffold0154 (381-434)||(6242-6295)
[»] scaffold0022 (2 HSPs)
scaffold0022 (139-212)||(101139-101212)
scaffold0022 (365-424)||(122547-122606)
[»] scaffold0050 (1 HSPs)
scaffold0050 (248-422)||(81982-82148)
[»] chr5 (25 HSPs)
chr5 (251-406)||(39643143-39643299)
chr5 (352-435)||(20399000-20399082)
chr5 (251-300)||(8839925-8839974)
chr5 (365-424)||(8840026-8840085)
chr5 (130-215)||(27588657-27588743)
chr5 (249-314)||(27354416-27354481)
chr5 (249-305)||(31051090-31051146)
chr5 (235-335)||(36184625-36184725)
chr5 (353-424)||(8285232-8285303)
chr5 (133-200)||(29857745-29857812)
chr5 (270-312)||(8840016-8840058)
chr5 (248-405)||(9900231-9900389)
chr5 (272-314)||(36184730-36184772)
chr5 (178-215)||(9663064-9663101)
chr5 (249-305)||(31065970-31066026)
chr5 (275-342)||(12640178-12640245)
chr5 (133-208)||(19205901-19205976)
chr5 (353-416)||(31050989-31051052)
chr5 (353-416)||(31065868-31065931)
chr5 (353-416)||(33391405-33391468)
chr5 (352-435)||(36184729-36184812)
chr5 (381-435)||(11275810-11275864)
chr5 (353-434)||(5971885-5971966)
chr5 (270-315)||(9637662-9637707)
chr5 (270-315)||(31065887-31065932)
[»] scaffold0059 (2 HSPs)
scaffold0059 (127-215)||(67180-67268)
scaffold0059 (127-215)||(75285-75373)
[»] scaffold0003 (1 HSPs)
scaffold0003 (139-215)||(52539-52615)
[»] chr6 (22 HSPs)
chr6 (139-215)||(27434748-27434824)
chr6 (127-215)||(1607968-1608058)
chr6 (132-215)||(4856915-4857000)
chr6 (132-215)||(11550282-11550367)
chr6 (349-435)||(19121975-19122061)
chr6 (282-370)||(15123706-15123795)
chr6 (270-330)||(8446984-8447044)
chr6 (270-330)||(8455788-8455848)
chr6 (251-287)||(21394388-21394424)
chr6 (290-405)||(32520093-32520209)
chr6 (169-212)||(4749524-4749567)
chr6 (143-201)||(4749411-4749469)
chr6 (127-201)||(4749496-4749570)
chr6 (249-315)||(8447068-8447134)
chr6 (249-315)||(8455872-8455938)
chr6 (387-421)||(17333311-17333345)
chr6 (307-435)||(17437676-17437806)
chr6 (529-571)||(20972004-20972046)
chr6 (352-405)||(3890026-3890079)
chr6 (382-435)||(9530550-9530603)
chr6 (270-379)||(17333335-17333443)
chr6 (361-434)||(26330318-26330391)
[»] scaffold0528 (2 HSPs)
scaffold0528 (249-305)||(1795-1851)
scaffold0528 (353-416)||(1889-1952)
[»] scaffold0340 (1 HSPs)
scaffold0340 (278-401)||(10910-11034)
[»] scaffold0289 (1 HSPs)
scaffold0289 (127-212)||(22112-22197)
[»] scaffold0216 (1 HSPs)
scaffold0216 (130-213)||(18080-18164)
[»] scaffold0191 (1 HSPs)
scaffold0191 (127-211)||(17021-17104)
[»] scaffold0490 (1 HSPs)
scaffold0490 (170-212)||(9237-9279)
[»] scaffold0360 (1 HSPs)
scaffold0360 (382-435)||(4796-4849)
[»] scaffold0137 (1 HSPs)
scaffold0137 (357-422)||(17116-17181)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 127 - 450
Target Start/End: Original strand, 16311598 - 16311916
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcataataattcaatatg 226  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  16311598 catggcatgataaattttgattggctgataaaaattaaatgagtcatgatccattttgattaactaataaaaaataaatgagtcataacaattcaatatg 16311697  T
Q  227 nnnnnnnncatagagacatatatctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatca 326  Q
            |||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||||| ||||||||||||||||||||    
T  16311698 aaaaaa--catagagaca-atatctaattgagaaacttttcacaatattttaaaatggtctctgcctttatcaaaagttgttcaattaattgcctcatca 16311794  T
Q  327 tgtgacaaaatatagagatagaaatctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatga 426  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||  |||||||  ||||||| |||||||||    
T  16311795 tgtgacaaaacatagagatagaaatctaattaagaaatttttgacgaagacataaactatattgaaatatta--agagtcaaagactaatttgagaatga 16311892  T
Q  427 attacaaaggcaacactgtaaaac 450  Q
    |||| |||| || |||||||||||    
T  16311893 attataaagacagcactgtaaaac 16311916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 514 - 787
Target Start/End: Original strand, 16311973 - 16312236
Alignment:
Q  514 ggctaatgcctaataaaagagatgtctagcgcaacagcaagcaacatagaggataaatccaaaggagttgtatctaagaacactaatttctgagaactcg 613  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  16311973 ggctaatgcctaataaaagagatgtctagcgcatcagcaaacaacatagaggataaatccaaaggagttgtatctaagaacactaatgtctgaaaactcg 16312072  T
Q  614 gttcctatttatcataaagtaccgtctaatgttcactttttcctttgagagccttgtcataactgcgttcatgttagcggggttttgaagaggaggagta 713  Q
    ||||||||||||           ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16312073 gttcctatttatt----------gtctaatgttcactttttcctttaagagccttgtcataactgcgttcatgttcgcggggttttgaagaggaggagta 16312162  T
Q  714 tgattgtcttggacgtgtgtatccaatttgtgatggcaccggtgaagactttttgcattgcttgttttcctgtg 787  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  16312163 tgattgtcttggacttgtgtatccaatttgtgatggcaccggtgaagactttttgcattgtttgttttcgtgtg 16312236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 235 - 434
Target Start/End: Complemental strand, 32503016 - 32502816
Alignment:
Q  235 catagagacatatatctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgac-a 333  Q
    |||||||||| | |||||||||| |||||||| | |||||||||||||||||| |||||||||||||| || ||||||||| || ||| ||||||||| |    
T  32503016 catagagacagagatctaattgataaacttttgataatatttcaaaatagtctttgtctttgtcaaaattttttcaattaaatgtctcgtcatgtgacaa 32502917  T
Q  334 aaatatagagatagaaatctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaa 433  Q
    ||| ||||||| |   |||||||| |||||  ||| || ||||||||||||||||||||||| ||||| ||| ||| |||||| ||||||||| ||||||    
T  32502916 aaacatagagacaatgatctaattgagaaacatttaacaaagacatgaactattttgaaatactaataaagtgaggaactaatttgagaatgacttacaa 32502817  T
Q  434 a 434  Q
    |    
T  32502816 a 32502816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 270 - 439
Target Start/End: Original strand, 22191423 - 22191594
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaa-tatagagatagaaatctaattaagaaattttt 368  Q
    ||||||| |||||||||| |||||||||||||||||  || ||||| | |||| ||||||||||||| || |||||||  ||||||||| | ||| ||||    
T  22191423 aatattttaaaatagtctttgtctttgtcaaaagtttctctattaagtccctcgtcatgtgacaaaaataaagagatatgaatctaattgaaaaactttt 22191522  T
Q  369 gacgaa-gacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaaggcaa 439  Q
     || || |||||  |||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  22191523 aacaaaagacatagactattttaaaatattaatagagtcagggactaatttgagagtgacttacaaaggcaa 22191594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 45049621 - 45049536
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    |||| |||||| ||||||||||| || || |||| |||| ||||||||||||||||||||| ||||||||||| ||||||||||||    
T  45049621 catgtcatgatcaattttgattggctaatgaaaaataaatgagtcatgatccattttgattggctaataaaaattaaatgagtcat 45049536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 353 - 435
Target Start/End: Original strand, 39760375 - 39760457
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    ||||| ||| ||||||||| |||| |||||||||||||||||||||||| ||||| |||||||| ||||||| | ||||||||    
T  39760375 taattgagagatttttgacaaagatatgaactattttgaaatattaatatagtcatggactaatttgagaatcacttacaaag 39760457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 517 - 591
Target Start/End: Complemental strand, 41554375 - 41554301
Alignment:
Q  517 taatgcctaataaaagagatgtctagcgcaacagcaagcaacatagaggataaatccaaaggagttgtatctaag 591  Q
    |||||||||| ||||||||||||||||||| |||||| ||| || |||||||||| | |||||| ||||||||||    
T  41554375 taatgcctaacaaaagagatgtctagcgcatcagcaaacaatatggaggataaattcgaaggagctgtatctaag 41554301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 20103621 - 20103544
Alignment:
Q  139 aattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataa-aaaataaatgagtcataat 215  Q
    |||||||||||| || | |||| |||| |||||||| ||||| |||||| |||||||| |||||||||||||||||||    
T  20103621 aattttgattgattggtgaaaactaaatgagtcatggtccatcttgattggctaataaaaaaataaatgagtcataat 20103544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 353 - 416
Target Start/End: Complemental strand, 17658861 - 17658798
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaat 416  Q
    ||||| ||||||||||||| ||||||   ||||||||||||||||||||||||  |||||||||    
T  17658861 taattgagaaatttttgacaaagacaatgactattttgaaatattaatagagttggggactaat 17658798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 8033659 - 8033760
Alignment:
Q  235 catagagacatatatctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaa 334  Q
    ||||||||||| ||||||||||| |||||||| ||||| ||| |||||||||  ||||||| | |||||||  |||||||| |  ||| |||| ||||||    
T  8033659 catagagacatgtatctaattgaaaaacttttgacaatcttttaaaatagtcattgtcttt-ttaaaagtttctcaattaagtctctcgtcatatgacaa 8033757  T
Q  335 aat 337  Q
    |||    
T  8033758 aat 8033760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 408
Target Start/End: Original strand, 8033761 - 8033927
Alignment:
Q  235 catagagacatatatctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaa 334  Q
    |||||||||||| ||  ||||||||||||||| ||||| ||||||||||      ||| |||| |||||||  |||||||| ||  || | ||  |||||    
T  8033761 catagagacatagattgaattgagaaacttttgacaatctttcaaaata------gtcattgttaaaagtttatcaattaagtgtttcgttattcgacaa 8033854  T
Q  335 aatatagagatagaaatctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcag 408  Q
    || | |||||| |  |||||||| ||||| ||||||| ||||||| ||| ||||| ||||||||||| ||||||    
T  8033855 aa-acagagatggggatctaattgagaaacttttgacaaagacataaaccattttaaaatattaataaagtcag 8033927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 8033572 - 8033657
Alignment:
Q  251 taattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaa 336  Q
    |||||||||||||||| ||||| |||||||||| ||  ||||||||| |||||||  |||||||| |  ||| |||| ||||||||    
T  8033572 taattgagaaacttttgacaatctttcaaaataatccttgtctttgttaaaagtttctcaattaagtctctcgtcatatgacaaaa 8033657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 5243259 - 5243326
Alignment:
Q  133 atgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaa 200  Q
    ||||| ||||||||||| || || |||| |||| ||||||||||||||||||||| | ||||| ||||    
T  5243259 atgatcaattttgattggctcatgaaaaataaatgagtcatgatccattttgattggataatagaaaa 5243326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 17658898 - 17658961
Alignment:
Q  248 atctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaa 311  Q
    |||||||||| ||  |||| |||||||||||||||||||  | ||||||||||||||| |||||    
T  17658898 atctaattgaaaagattttgacaatatttcaaaatagtcaatatctttgtcaaaagtttttcaa 17658961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 336
Target Start/End: Original strand, 17658817 - 17658883
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaa 336  Q
    |||||||||||||||||  |||||||||||||| ||  |||||||| |  ||| |||||||||||||    
T  17658817 aatatttcaaaatagtcattgtctttgtcaaaaatttctcaattaagtctctcgtcatgtgacaaaa 17658883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 33939948 - 33940002
Alignment:
Q  260 aacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaatta 314  Q
    ||||||| ||||||||| |||||||| | |||||||||||||||||  |||||||    
T  33939948 aacttttgacaatattttaaaatagtatatgtctttgtcaaaagtttctcaatta 33940002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 16311477 - 16311506
Alignment:
Q  3 cttccatgcttttaaaacacataaaatacc 32  Q
    ||||||||||||||||||||||||||||||    
T  16311477 cttccatgcttttaaaacacataaaatacc 16311506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 26407676 - 26407729
Alignment:
Q  367 ttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatga 420  Q
    ||||| |||||| | || |||||||| ||||||||||||||||||| |||||||    
T  26407676 ttgacaaagacagggaccattttgaattattaatagagtcagggaccaatatga 26407729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 434
Target Start/End: Original strand, 32013984 - 32014053
Alignment:
Q  365 ttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaa 434  Q
    ||||||| ||||||   ||||||||||||||| ||||||||||  ||||||| ||||||| | |||||||    
T  32013984 ttttgacaaagacagtgactattttgaaatatcaatagagtcatagactaatttgagaatcacttacaaa 32014053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 239 - 410
Target Start/End: Complemental strand, 845188 - 845016
Alignment:
Q  239 gagacatatatctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgac-aaaat 337  Q
    |||||| |||| |||||||||||||||| | |||||||||||||| | | ||||||||||| |||||  |||||||| || ||||||||||||| ||||     
T  845188 gagacaaatatttaattgagaaacttttgataatatttcaaaataatatttgtctttgtcagaagtttctcaattaagtgtctcatcatgtgacaaaaac 845089  T
Q  338 atagagatagaaatctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcaggg 410  Q
    ||||||| | | ||| |||| |||||  |||||| |||||| | |||||||||||||||||||||||| ||||    
T  845088 atagagacaaagatccaattgagaaacatttgacaaagacaaggactattttgaaatattaatagagtaaggg 845016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 352 - 435
Target Start/End: Complemental strand, 27293366 - 27293283
Alignment:
Q  352 ctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    |||||| ||||| ||||| | |||| | |||||| |||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  27293366 ctaattgagaaacttttggcaaagataagaactaatttgaaatattaatagagtcagagactaatttgagaatgatttacaaag 27293283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 350 - 435
Target Start/End: Complemental strand, 38783980 - 38783895
Alignment:
Q  350 atctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    |||||||||||||| ||||||| ||||||   |||||||| ||||||||||||||||| |||||||| ||| | ||| ||||||||    
T  38783980 atctaattaagaaacttttgacaaagacaatgactattttaaaatattaatagagtcatggactaatttgaaagtgacttacaaag 38783895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 40649967 - 40649911
Alignment:
Q  249 tctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagtt 305  Q
    ||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||    
T  40649967 tctaattgataaacttttgacaatatttcaaaatagtcattgtctttgtcaaaagtt 40649911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 3417429 - 3417350
Alignment:
Q  132 catgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtca 211  Q
    |||||| ||||||||||| ||||| |||| |||| |||||||||||||||||||||  |||||| |||||  ||||||||    
T  3417429 catgatcaattttgattggctgatgaaaaataaatgagtcatgatccattttgattgactaatagaaaatggatgagtca 3417350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 270 - 435
Target Start/End: Original strand, 10595412 - 10595577
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaatatagagatagaaatctaattaagaaatttttg 369  Q
    ||||||||||| |||||| |||  ||||||||||||  |||||||  | | || ||||||||||||| ||| ||| | | | || ||| ||||| |||||    
T  10595412 aatatttcaaactagtctttgttattgtcaaaagtttctcaattaggtccttcgtcatgtgacaaaacataaagaaatagaccttattgagaaacttttg 10595511  T
Q  370 acgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    || ||||||   |||| ||||||||||||||||||| | ||| |||| ||| ||||  ||||||||    
T  10595512 acaaagacaatgactaatttgaaatattaatagagttatggattaatttgacaatgtcttacaaag 10595577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 11440917 - 11440864
Alignment:
Q  156 aaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagt 209  Q
    ||||| |||| |||||||||||||||||||||  ||||||||||||||||||||    
T  11440917 aaaaaataaatgagtcatgatccattttgattgactaataaaaaataaatgagt 11440864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 432
Target Start/End: Original strand, 7790340 - 7790483
Alignment:
Q  289 tgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaa-tatagagatagaaatctaattaagaaatttttgacgaagacatgaactatt 387  Q
    ||||||||||||||||| || |||| | | |||||||||||||||||| ||||  || | | | |||||| ||||| ||||||  |||| |  ||||| |    
T  7790340 tgtctttgtcaaaagttttttaatttagtccctcatcatgtgacaaaaatataatgacaaagacctaattgagaaacttttgataaagatagaaactaat 7790439  T
Q  388 ttgaaatattaatagagtcagggactaatatgagaatgaattaca 432  Q
    ||||||||||||||||||||   |||||| ||||||||| |||||    
T  7790440 ttgaaatattaatagagtca-taactaatttgagaatgacttaca 7790483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 8314018 - 8314061
Alignment:
Q  169 gtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  8314018 gtcatgatcaattttgattggctaataaaaaataaatgagtcat 8314061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 352 - 435
Target Start/End: Original strand, 10377539 - 10377622
Alignment:
Q  352 ctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    |||||| ||||| |||||||  | ||||| |||| |||||||||||||||||||||  ||||||| ||| ||||| ||||||||    
T  10377539 ctaattgagaaaattttgacacaaacatggactaatttgaaatattaatagagtcaaagactaatttgataatgacttacaaag 10377622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 34835628 - 34835695
Alignment:
Q  269 caatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaa 336  Q
    |||||||||||| ||||||||||||||||||||||||  |||||| | | | | ||||||||||||||    
T  34835628 caatatttcaaactagtctctgtctttgtcaaaagtttctcaatttagtcctttatcatgtgacaaaa 34835695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 22544157 - 22544243
Alignment:
Q  130 ggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaat-aaaaaataaatgagtcataat 215  Q
    |||||||| |||||||||||  |||| |||| |||| |||||||| | ||| |||||| |||||| ||||||| |||||||||||||    
T  22544157 ggcatgatcaattttgattggttgatgaaaactaaatgagtcatggttcatcttgattggctaataaaaaaatgaatgagtcataat 22544243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 336
Target Start/End: Original strand, 46410686 - 46410752
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaa 336  Q
    ||||||||||||||||||| |||||||||||||||| ||| ||||| |  ||| |||||||| ||||    
T  46410686 aatatttcaaaatagtctcagtctttgtcaaaagtttttcgattaagtctctcgtcatgtgaaaaaa 46410752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 8314015 - 8314088
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaa 200  Q
    |||| |||||| ||||||||||| || ||||||| |||| ||||||||||| ||||||||| | | ||||||||    
T  8314015 catgtcatgatcaattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgataaaaaa 8314088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 28504767 - 28504714
Alignment:
Q  382 actattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    |||| |||||||||||||||||||||  ||||||| ||||||||| ||||||||    
T  28504767 actagtttgaaatattaatagagtcatagactaatttgagaatgacttacaaag 28504714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 270 - 397
Target Start/End: Original strand, 40649818 - 40649946
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaat-atagagatagaaatctaattaagaaattttt 368  Q
    ||||||||||||| ||   ||||||||| |||||||  |||||||| | |||| |||||||| ||||  ||||| | |  | ||||||||||||| ||||    
T  40649818 aatatttcaaaatggtacatgtctttgttaaaagtttctcaattaagtccctcgtcatgtgaaaaaaacatagaaacatgagtctaattaagaaactttt 40649917  T
Q  369 gacgaagacatgaactattttgaaatatt 397  Q
    ||| ||||||   ||||||||||||||||    
T  40649918 gacaaagacaatgactattttgaaatatt 40649946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 11440894 - 11440835
Alignment:
Q  140 attttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaa 199  Q
    ||||||||||||| ||||||| |||| |||| | |||||||||||||| | |||||||||    
T  11440894 attttgattgactaataaaaaataaatgagttaagatccattttgattggttaataaaaa 11440835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 270 - 305
Target Start/End: Complemental strand, 46410861 - 46410826
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagtt 305  Q
    |||||||||||||||||||||||||| |||||||||    
T  46410861 aatatttcaaaatagtctctgtctttatcaaaagtt 46410826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 336
Target Start/End: Complemental strand, 17347272 - 17347206
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaa 336  Q
    |||||||||||||| |||||||||||||||||| |   |||||||| |  |||||||||||| ||||    
T  17347272 aatatttcaaaataatctctgtctttgtcaaaaatctctcaattaagtctctcatcatgtgaaaaaa 17347206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 353 - 435
Target Start/End: Complemental strand, 31063335 - 31063255
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    ||||| ||||||||||| | |||||||| ||||| |||||||||||||| |||||| | ||||| ||||||| | ||||||||    
T  31063335 taatttagaaatttttgtcaaagacatggactatcttgaaatattaata-agtcagag-ctaatttgagaattacttacaaag 31063255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 353 - 435
Target Start/End: Complemental strand, 40649862 - 40649780
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    ||||| ||||| |||| || |||||||| || ||||||||||||||||||| | | | |||||| ||||||| | ||||||||    
T  40649862 taattgagaaacttttaacaaagacatgtaccattttgaaatattaatagaattaagaactaatttgagaatcacttacaaag 40649780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 353 - 434
Target Start/End: Complemental strand, 15395278 - 15395197
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaa 434  Q
    ||||| |||| ||||| || ||||||   |||||||| |||||||||||||||||  ||||||| ||||||| | |||||||    
T  15395278 taattgagaattttttaacaaagacagagactattttaaaatattaatagagtcatagactaatttgagaatcatttacaaa 15395197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 287444 - 287364
Alignment:
Q  132 catgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    |||||| ||||||||||| || ||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  287444 catgatcaattttgattggctaataaaaaataaatgagtcatgatccattttgattggctaataaaaaataaatgagtcat 287364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 248 - 434
Target Start/End: Complemental strand, 29490563 - 29490376
Alignment:
Q  248 atctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgac-aaaatatagagata 346  Q
    ||||||||||||||||||| | |||||||||||||||| ||| ||||| |||||||||  |||| ||| || ||| ||||||| | |||| | ||||| |    
T  29490563 atctaattgagaaacttttgataatatttcaaaatagtgtctatctttatcaaaagtttctcaaataaatgtctcgtcatgtgccaaaaacacagagaca 29490464  T
Q  347 gaaatctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaa 434  Q
    || |||||||| ||||| |||| || ||||||  ||||||||| ||||||||||| | |||  ||||||| ||| | ||| |||||||    
T  29490463 gagatctaattgagaaactttttacaaagacaaaaactattttaaaatattaatataatcatagactaatttgatagtgacttacaaa 29490376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 10895991 - 10895906
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    |||| |||||| ||||||||||| || || |||| |||| |||||||||||||||||||||  |||||||||||||||||||||||    
T  10895991 catgtcatgatcaattttgattggctaatgaaaaataaatgagtcatgatccattttgattgactaataaaaaataaatgagtcat 10895906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 354 - 416
Target Start/End: Original strand, 32029634 - 32029696
Alignment:
Q  354 aattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaat 416  Q
    |||| ||||||||||||| ||||||||||||||||| |||||| ||||||||||| |||||||    
T  32029634 aattgagaaatttttgacaaagacatgaactattttaaaatataaatagagtcagagactaat 32029696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 270 - 403
Target Start/End: Original strand, 23768800 - 23768935
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaatatagagatagaaatctaattaagaaatttttg 369  Q
    ||||||| ||||||||||||||||||    ||| || ||||||||| | |||| || ||||| |||||||||| ||| || | ||||| ||||| |||||    
T  23768800 aatattttaaaatagtctctgtctttacttaaaatttttcaattaaatccctcgtcgtgtgaaaaaatatagaaatataagtttaattgagaaacttttg 23768899  T
Q  370 acgaagacatgaactattttg--aaatattaataga 403  Q
    || || |||| ||||||||||  |||||||||||||    
T  23768900 acaaaaacataaactattttgaaaaatattaataga 23768935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 16292037 - 16291970
Alignment:
Q  133 atgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaa 200  Q
    ||||| |||||||||||||| || |||| |||| ||||||||||||||||||||| | ||||||||||    
T  16292037 atgatcaattttgattgactcatgaaaaataaatgagtcatgatccattttgattggataataaaaaa 16291970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 270 - 426
Target Start/End: Complemental strand, 21136756 - 21136599
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaa-tatagagatagaaatctaattaagaaattttt 368  Q
    ||||||||||||||||| || ||||||||||||  |  |||||||  |   || ||| ||||||||| |||| ||| ||  | |||||| | ||| ||||    
T  21136756 aatatttcaaaatagtcactatctttgtcaaaaaattctcaattaggtttttcgtcaagtgacaaaagtataaagaaagggacctaattgaaaaactttt 21136657  T
Q  369 gacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatga 426  Q
    ||| |||| | | ||||||||||||||||||||||||||  ||||||| |||||||||    
T  21136656 gacaaagataaggactattttgaaatattaatagagtcaaagactaatttgagaatga 21136599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 10028707 - 10028655
Alignment:
Q  382 actattttgaaatattaatagagtcagggactaatatgagaatgaattacaaa 434  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  10028707 actaatttgaaatattaatagagtcagtgactaatttgagaatgacttacaaa 10028655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 23136582 - 23136498
Alignment:
Q  132 catgataaattttgattgactgataaaaatta-aacgagtcatgatccattttgattagctaataaaaaataaatgagtcataat 215  Q
    |||||| |||||||| || ||||| |||| || || | |||||||  |||||||||| |||||||||||||||||||||||||||    
T  23136582 catgatcaattttgactggctgatgaaaactataaagtgtcatgaatcattttgattggctaataaaaaataaatgagtcataat 23136498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 23161052 - 23161136
Alignment:
Q  128 atggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    |||||||||| ||||||||||| |  || |||| |||| | |||||||| ||||||||||  ||||||||||| |||||||||||    
T  23161052 atggcatgatcaattttgattggcctatgaaaactaaatgtgtcatgattcattttgattgactaataaaaaagaaatgagtcat 23161136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 287446 - 287403
Alignment:
Q  169 gtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  287446 gtcatgatcaattttgattggctaataaaaaataaatgagtcat 287403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 17895017 - 17895090
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaa 200  Q
    |||| |||||| ||||||||||| || ||||||| |||| |||||||||||  |||||||| ||||| ||||||    
T  17895017 catgtcatgatcaattttgattggctcataaaaaataaatgagtcatgatctcttttgattggctaagaaaaaa 17895090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 32029529 - 32029594
Alignment:
Q  251 taattgagaaacttttcacaatatttcaaaatagtctctgtc-tttgtcaaaagttattcaattaa 315  Q
    |||||||||||||| |  ||||||||||||||||||| |||| |||||||||||||  ||||||||    
T  32029529 taattgagaaacttctgccaatatttcaaaatagtctatgtcttttgtcaaaagtttctcaattaa 32029594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 35136817 - 35136740
Alignment:
Q  139 aattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataa-aaaataaatgagtcataat 215  Q
    |||||||||||  || | |||| ||||||||||||| ||| | ||||||||||||||| |||| ||||||||||||||    
T  35136817 aattttgattggttggtgaaaactaaacgagtcatggtccgtcttgattagctaataaaaaaacaaatgagtcataat 35136740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 10895939 - 10895879
Alignment:
Q  140 attttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaa 200  Q
    ||||||||||||| ||||||| |||| |||||||||||||| |||||| | | ||||||||    
T  10895939 attttgattgactaataaaaaataaatgagtcatgatccatattgattggttgataaaaaa 10895879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 434
Target Start/End: Complemental strand, 10028794 - 10028747
Alignment:
Q  387 tttgaaatattaatagagtcagggactaatatgagaatgaattacaaa 434  Q
    |||||||||||||||||||| | ||||||| ||||||||| |||||||    
T  10028794 tttgaaatattaatagagtcggtgactaatttgagaatgacttacaaa 10028747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 12167179 - 12167246
Alignment:
Q  133 atgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaa 200  Q
    ||||| ||||||||||| || || |||| |||| ||||||||||||||||||||| | ||||| ||||    
T  12167179 atgatcaattttgattggctcatgaaaaataaatgagtcatgatccattttgattggataatagaaaa 12167246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 12411607 - 12411674
Alignment:
Q  133 atgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaa 200  Q
    ||||| ||||||||||| || || |||| |||| ||||||||||||||||||||| | ||||| ||||    
T  12411607 atgatcaattttgattggctcatgaaaaataaatgagtcatgatccattttgattggataatagaaaa 12411674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 15624334 - 15624385
Alignment:
Q  161 ttaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    ||||| ||||||||||||||||||||| ||| || ||||| |||||||||||    
T  15624334 ttaaatgagtcatgatccattttgattggctgatgaaaaacaaatgagtcat 15624385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 15624517 - 15624568
Alignment:
Q  161 ttaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    ||||| ||||||||||||||| ||||| ||| |||||||| |||||||||||    
T  15624517 ttaaatgagtcatgatccattatgattggctcataaaaaacaaatgagtcat 15624568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 15648122 - 15648173
Alignment:
Q  161 ttaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    ||||| ||||||||||||||||||||| ||| || ||||| |||||||||||    
T  15648122 ttaaatgagtcatgatccattttgattggctcatgaaaaacaaatgagtcat 15648173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 15648305 - 15648356
Alignment:
Q  161 ttaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    ||||| ||||||||||||||| ||||| ||| |||||||| |||||||||||    
T  15648305 ttaaatgagtcatgatccattatgattggctcataaaaaacaaatgagtcat 15648356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 17895020 - 17895063
Alignment:
Q  169 gtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||    
T  17895020 gtcatgatcaattttgattggctcataaaaaataaatgagtcat 17895063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 4930275 - 4930229
Alignment:
Q  167 gagtcatgatccattttgattagctaataaaaaataaatgagtcata 213  Q
    ||||||||||||||||||||| ||| || ||||| ||||||||||||    
T  4930275 gagtcatgatccattttgattggctcatgaaaaacaaatgagtcata 4930229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 8362435 - 8362365
Alignment:
Q  130 ggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaa 200  Q
    |||||||| |||||||||||  |||| |||| |||| |||||||| | ||| |||||| ||||||||||||    
T  8362435 ggcatgatcaattttgattggttgatgaaaactaaatgagtcatggttcatcttgattggctaataaaaaa 8362365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 17890880 - 17890954
Alignment:
Q  139 aattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaat-aaaaaataaatgagtcat 212  Q
    ||||||||||| ||| | |||| |||| |||||||| ||| | |||||| |||||| ||||||||||||||||||    
T  17890880 aattttgattggctggtgaaaactaaatgagtcatggtccgtcttgattggctaataaaaaaataaatgagtcat 17890954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 18666921 - 18666835
Alignment:
Q  130 ggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataa-aaaataaatgagtcataat 215  Q
    ||||||||  ||||||||||  |||| |||| |||| |||||||| | ||| |||||| |||||||| ||||| |||||||||||||    
T  18666921 ggcatgatccattttgattggttgatgaaaactaaatgagtcatggttcatcttgattggctaataaaaaaatgaatgagtcataat 18666835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 38225706 - 38225752
Alignment:
Q  366 tttgacgaagacatgaactattttgaaatattaatagagtcagggac 412  Q
    |||||| ||||||||||| ||||| || |||||||||||||||||||    
T  38225706 tttgacaaagacatgaaccattttaaattattaatagagtcagggac 38225752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 45250996 - 45251082
Alignment:
Q  130 ggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaat-aaaaaataaatgagtcataat 215  Q
    |||||||| |||||||||||  |||| |||| |||| |||||||| | ||| |||||  |||||| ||||||| |||||||||||||    
T  45250996 ggcatgatcaattttgattggttgatgaaaactaaatgagtcatggttcatcttgatcggctaataaaaaaatgaatgagtcataat 45251082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 45531517 - 45531547
Alignment:
Q  1 aacttccatgcttttaaaacacataaaatac 31  Q
    |||||||||||||||||||||||||||||||    
T  45531517 aacttccatgcttttaaaacacataaaatac 45531547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 25113392 - 25113437
Alignment:
Q  167 gagtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    |||| ||||| |||||||||| |||||| |||||||||||||||||    
T  25113392 gagttatgattcattttgattggctaatgaaaaataaatgagtcat 25113437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 40267326 - 40267394
Alignment:
Q  139 aattttgattgactgataaaaattaaacgagtcat-gatccattttgattagctaataaaaaataaatga 207  Q
    |||||||||||||| || |||| |||  ||||||| |||||||||||||| ||||||||||| |||||||    
T  40267326 aattttgattgactcatgaaaaataat-gagtcattgatccattttgattggctaataaaaagtaaatga 40267394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 45531668 - 45531705
Alignment:
Q  178 cattttgattagctaataaaaaataaatgagtcataat 215  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  45531668 cattttgattgactaataaaaaataaatgagtcataat 45531705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 515 - 611
Target Start/End: Original strand, 21420959 - 21421055
Alignment:
Q  515 gctaatgcctaataaaagagatgtctagcgcaacagcaagcaacatagaggataaatccaaaggagttgtatctaagaacactaatttctgagaact 611  Q
    |||||| ||||| ||||||||||||||||||| || |||||||||| ||||||||||   |||||||||||||||| ||||||||||||| ||||||    
T  21420959 gctaatacctaacaaaagagatgtctagcgcatcaacaagcaacatggaggataaatatgaaggagttgtatctaaaaacactaatttctcagaact 21421055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 42710106 - 42710041
Alignment:
Q  249 tctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaatta 314  Q
    |||||||||||||||||| | ||||||||||||||||||  ||||||||||||||||  |||||||    
T  42710106 tctaattgagaaacttttgataatatttcaaaatagtctaagtctttgtcaaaagtttctcaatta 42710041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 270 - 398
Target Start/End: Original strand, 42709958 - 42710086
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaatatagagatagaaatctaattaagaaatttttg 369  Q
    ||||||| |||||||||  |||||||||||||||||  |||||||| | |||| |||| ||| |||| ||||| | |  | ||||||| ||||| |||||    
T  42709958 aatattttaaaatagtcaatgtctttgtcaaaagtttctcaattaagtccctcgtcatatgaaaaaacatagaaacatgagtctaattgagaaacttttg 42710057  T
Q  370 acgaagacatgaactattttgaaatatta 398  Q
    || ||||| |  |||||||||||||||||    
T  42710058 acaaagacttagactattttgaaatatta 42710086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 29494106 - 29494020
Alignment:
Q  130 ggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataa-aaaataaatgagtcataat 215  Q
    |||||||| |||||||||||  |||| |||| |||| |||||||||| ||| |||||| |||||||| ||||| |||||||||||||    
T  29494106 ggcatgatcaattttgattggttgatgaaaactaaatgagtcatgattcatcttgattggctaataaaaaaatgaatgagtcataat 29494020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 270 - 406
Target Start/End: Complemental strand, 30935377 - 30935240
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaat-atagagatagaaatctaattaagaaattttt 368  Q
    ||||||||||| || || || ||||||||||||   |||||||||  | |||| |||||||||||||  ||| |||||   |||||| | | ||| ||||    
T  30935377 aatatttcaaactaatccctatctttgtcaaaaaaaattcaattaggtccctcgtcatgtgacaaaaacataaagataaggatctaagtgaaaaactttt 30935278  T
Q  369 gacgaagacatgaactattttgaaatattaatagagtc 406  Q
    ||| |||| |||||||| ||||||||||||||||||||    
T  30935277 gacaaagatatgaactagtttgaaatattaatagagtc 30935240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 435
Target Start/End: Complemental strand, 12428002 - 12427836
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaat-atagagatagaaatctaattaagaaattttt 368  Q
    ||||||||||| |||||  ||||||||||||||||| |||||||   |  ||| |||||||||||||  ||| ||| |   | |||| | ||||||||||    
T  12428002 aatatttcaaactagtccatgtctttgtcaaaagtttttcaatttggtctctcgtcatgtgacaaaaacataaagacaatgacctaaatgagaaattttt 12427903  T
Q  369 gacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    | | |||| |   |||| ||| ||||||||||||||||| | |||||| ||||||||| ||||||||    
T  12427902 ggcaaagataatgactaatttaaaatattaatagagtcatgaactaatttgagaatgacttacaaag 12427836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 353 - 435
Target Start/End: Complemental strand, 42710002 - 42709920
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    ||||| ||||| ||||||| |||||||  |||||||| |||||||||||||||| | |||| || ||||||| | ||||||||    
T  42710002 taattgagaaacttttgacaaagacattgactattttaaaatattaatagagtcggagactgatttgagaatcacttacaaag 42709920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 33384192 - 33384233
Alignment:
Q  248 atctaattgagaaacttttcacaatatttcaaaatagtctct 289  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  33384192 atctaatcgagaaacttttaacaatatttcaaaatagtctct 33384233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 26752051 - 26752010
Alignment:
Q  272 tatttcaaaatagtctctgtctttgtcaaaagttattcaatt 313  Q
    ||||| |||||||||| ||||||||||||||||| |||||||    
T  26752051 tattttaaaatagtctttgtctttgtcaaaagtttttcaatt 26752010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 35660958 - 35661011
Alignment:
Q  350 atctaattaagaaatttttgacgaagacatgaactattttgaaatattaataga 403  Q
    |||||||| ||||| |||| || |||||| |||||| |||||||||||||||||    
T  35660958 atctaattgagaaacttttaacaaagacaagaactaatttgaaatattaataga 35661011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 249 - 422
Target Start/End: Original strand, 55264521 - 55264695
Alignment:
Q  249 tctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgac-aaaatatagagatag 347  Q
    |||||||||||||||||| |||||||||||||||||||  |||||||||||||||||  |||||||| | | |   |||||||| |||| |||||||  |    
T  55264521 tctaattgagaaacttttgacaatatttcaaaatagtcaatgtctttgtcaaaagtttctcaattaagtccatatccatgtgacaaaaacatagagacgg 55264620  T
Q  348 aaatctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgaga 422  Q
      |  ||||| ||||| ||||||| ||||||   ||| |||||||||||||||||| |||| ||||||| |||||    
T  55264621 ggaattaattgagaaacttttgacaaagacacagactcttttgaaatattaatagattcagagactaatttgaga 55264695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 24071 - 24156
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    |||| |||||| ||||||||||| || || |||| |||| ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  24071 catgtcatgatcaattttgattggctaatgaaaaataaatgagtcattatccattttgattggctaataaaaaataaatgagtcat 24156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 44137497 - 44137567
Alignment:
Q  235 catagagacatatatctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagtt 305  Q
    |||||| |||||  |||||||||||||||||| |||||||||||||||||| | || ||||||||||||||    
T  44137497 catagaaacataagtctaattgagaaacttttgacaatatttcaaaatagtttatgcctttgtcaaaagtt 44137567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 361 - 434
Target Start/End: Complemental strand, 44137466 - 44137393
Alignment:
Q  361 aaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaa 434  Q
    ||||||||||| ||||||   ||||||||||||||||||||||||||| ||||||| ||||||| | |||||||    
T  44137466 aaatttttgacaaagacagatactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaa 44137393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 18066733 - 18066809
Alignment:
Q  139 aattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcataat 215  Q
    |||||||||||  || | |||| |||| |||||||| ||||| |||||| |||||||||||||||||||||||||||    
T  18066733 aattttgattggttggtgaaaactaaatgagtcatggtccatcttgattggctaataaaaaataaatgagtcataat 18066809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 270 - 371
Target Start/End: Original strand, 55264438 - 55264541
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaata--tagagatagaaatctaattaagaaatttt 367  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||| |  || |||||||||||||| |   ||||| |||| ||||||| ||||| |||    
T  55264438 aatatttcaaaatagtcattgtctttgtcaaaagtttttcaattaaatctcttatcatgtgacaaaaaaagaagagaaagaagtctaattgagaaacttt 55264537  T
Q  368 tgac 371  Q
    ||||    
T  55264538 tgac 55264541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 21782177 - 21782238
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtga 331  Q
    ||||||||||||||||| || ||||| ||||||||| ||||||||| | |||||||||||||    
T  21782177 aatatttcaaaatagtcactctctttatcaaaagtttttcaattaagtccctcatcatgtga 21782238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 248 - 407
Target Start/End: Original strand, 39051219 - 39051376
Alignment:
Q  248 atctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgac-aaaatatagagata 346  Q
    ||||| ||||||||||||  | |||||||||||||||||||||||||  |||||||||  ||||||||  | ||  ||||| ||| |||| ||| ||| |    
T  39051219 atctagttgagaaactttg-ataatatttcaaaatagtctctgtcttgatcaaaagtttctcaattaa--gtcttgtcatgcgacaaaaacataaagaca 39051315  T
Q  347 gaaatctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtca 407  Q
       |||||||| ||||| ||||||| ||||||   |||||||| |||||||||||||||||    
T  39051316 atgatctaattgagaaacttttgacaaagacagtgactattttaaaatattaatagagtca 39051376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 270 - 371
Target Start/End: Original strand, 44137430 - 44137531
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaatatagagatagaaatctaattaagaaatttttg 369  Q
    |||||||||||||||| |||||||||||||||| ||  |||||||| |  |||||| ||||| |||| ||||| | | || ||||||| ||||| |||||    
T  44137430 aatatttcaaaatagtatctgtctttgtcaaaaatttatcaattaagtctctcatcgtgtgaaaaaacatagaaacataagtctaattgagaaacttttg 44137529  T
Q  370 ac 371  Q
    ||    
T  44137530 ac 44137531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 611
Target Start/End: Complemental strand, 19718284 - 19718188
Alignment:
Q  515 gctaatgcctaataaaagagatgtctagcgcaacagcaagcaacatagaggataaatccaaaggagttgtatctaagaacactaatttctgagaact 611  Q
    ||||||||||| |||||||||||  || |||| || ||||||| || |||||||| | |  ||||||||||||||| | ||||||||||| ||||||    
T  19718284 gctaatgcctagtaaaagagatgattaacgcatcaccaagcaatatggaggataagttcggaggagttgtatctaaaatcactaatttctcagaact 19718188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 517 - 611
Target Start/End: Original strand, 55248340 - 55248434
Alignment:
Q  517 taatgcctaataaaagagatgtctagcgcaacagcaagcaacatagaggataaatccaaaggagttgtatctaagaacactaatttctgagaact 611  Q
    |||||||||| ||||||||||   || |||  |||||||||||| ||||||||||  | ||||| ||||||||| | ||||||||||| ||||||    
T  55248340 taatgcctaacaaaagagatgctcagtgcattagcaagcaacattgaggataaatttagaggagctgtatctaaaagcactaatttctcagaact 55248434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 13119232 - 13119277
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaa 315  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||    
T  13119232 aatatttcaaaatagtcgctgtctttgtcaaaagtttctcaattaa 13119277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 13914737 - 13914777
Alignment:
Q  172 atgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  13914737 atgatcaattttgattggctaataaaaaataaatgagtcat 13914777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 14288141 - 14288208
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaat 194  Q
    |||| |||||| ||||||||||| || || |||| |||| |||||||||| |||||||||| ||||||    
T  14288141 catgtcatgatcaattttgattggctaatgaaaaataaatgagtcatgattcattttgattggctaat 14288208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 14288144 - 14288187
Alignment:
Q  169 gtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    ||||||||| ||||||||| |||||| |||||||||||||||||    
T  14288144 gtcatgatcaattttgattggctaatgaaaaataaatgagtcat 14288187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 270 - 317
Target Start/End: Complemental strand, 55264670 - 55264623
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaatt 317  Q
    |||||||||||| ||||| |||||||||||||||||  ||||||||||    
T  55264670 aatatttcaaaagagtctgtgtctttgtcaaaagtttctcaattaatt 55264623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 416
Target Start/End: Original strand, 56087768 - 56087819
Alignment:
Q  365 ttttgacgaagacatgaactattttgaaatattaatagagtcagggactaat 416  Q
    ||||||| |||||||||| || |||||||||| ||||||||||| |||||||    
T  56087768 ttttgacaaagacatgaattagtttgaaatatcaatagagtcagagactaat 56087819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 353 - 407
Target Start/End: Original strand, 13119375 - 13119429
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtca 407  Q
    ||||| ||||| |||| || |||||| | ||||||||||||||||||||||||||    
T  13119375 taattgagaaacttttaacaaagacagggactattttgaaatattaatagagtca 13119429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 13914737 - 13914791
Alignment:
Q  133 atgataaattttgattgactgataaaaattaaacgagtcatgatccattttgatt 187  Q
    ||||| ||||||||||| || ||||||| |||| ||||||||||| |||||||||    
T  13914737 atgatcaattttgattggctaataaaaaataaatgagtcatgatctattttgatt 13914791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 13923285 - 13923331
Alignment:
Q  167 gagtcatgatccattttgattagctaataaaaaataaatgagtcata 213  Q
    ||||||||||||||||||||| ||| || ||||| ||||||||||||    
T  13923285 gagtcatgatccattttgattggctcatgaaaaacaaatgagtcata 13923331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 21782261 - 21782295
Alignment:
Q  251 taattgagaaacttttcacaatatttcaaaatagt 285  Q
    |||||||||||||||| ||||||||||||||||||    
T  21782261 taattgagaaacttttgacaatatttcaaaatagt 21782295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 336
Target Start/End: Complemental strand, 33614422 - 33614356
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaa 336  Q
    ||||||||||| ||||||||||||||| ||||||||  ||||||   | ||||||||||||| ||||    
T  33614422 aatatttcaaactagtctctgtctttgacaaaagtttctcaatttggtccctcatcatgtgataaaa 33614356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 35004551 - 35004509
Alignment:
Q  382 actattttgaaatattaatagagtcagggactaatatgagaat 424  Q
    ||||||||||  ||||||||||||||||||| |||||||||||    
T  35004551 actattttgagttattaatagagtcagggaccaatatgagaat 35004509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 365 - 415
Target Start/End: Complemental strand, 55264470 - 55264420
Alignment:
Q  365 ttttgacgaagacatgaactattttgaaatattaatagagtcagggactaa 415  Q
    ||||||| ||||||   ||||||||||||||||||||||||||| ||||||    
T  55264470 ttttgacaaagacaatgactattttgaaatattaatagagtcagtgactaa 55264420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 13119419 - 13119374
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaa 315  Q
    ||||||||||||||||| |||||||||| |||||||  ||||||||    
T  13119419 aatatttcaaaatagtccctgtctttgttaaaagtttctcaattaa 13119374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 35648042 - 35648005
Alignment:
Q  178 cattttgattagctaataaaaaataaatgagtcataat 215  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  35648042 cattttgattggctaataaaaaataaataagtcataat 35648005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 67241 - 67321
Alignment:
Q  132 catgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    |||||||||||||||||| || || |||| |||| |||| |||||||||||||||| ||||||||||||||||||||||||    
T  67241 catgataaattttgattggctaatgaaaaataaatgagttatgatccattttgatttgctaataaaaaataaatgagtcat 67321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 248 - 435
Target Start/End: Original strand, 20124132 - 20124319
Alignment:
Q  248 atctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgac-aaaatatagagata 346  Q
    ||||| ||||||||||||| || |||||||||||||||||||||| |||||||||| | ||| ||||| |  ||| | | ||||| |||| ||||||| |    
T  20124132 atctagttgagaaacttttgactatatttcaaaatagtctctgtccttgtcaaaagcttttcgattaagtatctcgttaggtgacaaaaacatagagaca 20124231  T
Q  347 gaaatctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
       |||||||| | ||| ||||||| || |||   |||||||||||||||| |||||||||| ||||||| ||| ||||| ||||||||    
T  20124232 tggatctaattgaaaaacttttgacaaaaacaatgactattttgaaatattgatagagtcagagactaatttga-aatgacttacaaag 20124319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 248 - 405
Target Start/End: Complemental strand, 33429076 - 33428919
Alignment:
Q  248 atctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgac-aaaatatagagata 346  Q
    ||||||||||||||| ||| |||||||||||||||||| |  ||||||||||||||||  |||   || | |||| |||| | || |||| ||||||| |    
T  33429076 atctaattgagaaacatttgacaatatttcaaaatagtttacgtctttgtcaaaagtttctcagccaaatccctcgtcatataacaaaaacatagagaga 33428977  T
Q  347 gaaatctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagt 405  Q
     | || ||||| ||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  33428976 -agatttaattgagaaacttttgacaaagatatgaactattttgaaatattaatagagt 33428919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 354 - 416
Target Start/End: Original strand, 49782193 - 49782255
Alignment:
Q  354 aattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaat 416  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||||    
T  49782193 aattaagaaacttttgacgaaggcatgaactattttgaaatattaatagagttatggactaat 49782255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 20919390 - 20919302
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcataat 215  Q
    |||| |||||| ||||||||||| ||| | |||| |||| | |||||||  |||||||||| |||||||||||||||||||||||||||    
T  20919390 catgacatgatcaattttgattggctggtgaaaactaaatgtgtcatgaatcattttgattggctaataaaaaataaatgagtcataat 20919302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 20928352 - 20928264
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcataat 215  Q
    |||| |||||| ||||||||||| ||| | |||| |||| | |||||||  |||||||||| |||||||||||||||||||||||||||    
T  20928352 catgacatgatcaattttgattggctggtgaaaactaaatgtgtcatgaatcattttgattggctaataaaaaataaatgagtcataat 20928264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 37197951 - 37197863
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcataat 215  Q
    |||| |||||| ||||||||||| ||||| |||| |||| | |||||||  |||||||||| | |||||||||||||||||||||||||    
T  37197951 catgacatgatcaattttgattggctgatgaaaactaaatgtgtcatgaatcattttgattggttaataaaaaataaatgagtcataat 37197863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 235 - 335
Target Start/End: Complemental strand, 47337275 - 47337175
Alignment:
Q  235 catagagacatatatctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaa 334  Q
    ||||||||||   |||||||||| |||||||| |||||||||||||||||||  ||  ||| ||||||||| ||| |||||||| ||| |||||||||||    
T  47337275 catagagacagggatctaattgaaaaacttttgacaatatttcaaaatagtcattggttttatcaaaagtttttcgattaattgtctcgtcatgtgacaa 47337176  T
Q  335 a 335  Q
    |    
T  47337175 a 47337175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 6440852 - 6440937
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    |||| |||||| |||||| ||||||| || |||| |||| |||||||||| |||||||||| || |||||||||||| ||||||||    
T  6440852 catgtcatgatcaattttaattgactaatgaaaaataaatgagtcatgattcattttgattggcaaataaaaaataattgagtcat 6440937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 249 - 435
Target Start/End: Complemental strand, 51862623 - 51862438
Alignment:
Q  249 tctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgac-aaaatatagagatag 347  Q
    ||||||||||||| |||| |||||||||||||||||||  |||||||||||||| |   |||||||| || ||  ||||||||| |||| | ||| | |     
T  51862623 tctaattgagaaatttttgacaatatttcaaaatagtcattgtctttgtcaaaaat--ctcaattaagtgtctagtcatgtgacaaaaacacagaaacat 51862526  T
Q  348 aaatctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
     || |||||| ||||| ||||||   ||| | || |||  ||||||||| ||||||||||||||||||| ||| ||| | ||||||||    
T  51862525 gaacctaattgagaaacttttgagatagataggatctacattgaaatatcaatagagtcagggactaatttgataatcacttacaaag 51862438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 373 - 435
Target Start/End: Complemental strand, 27812270 - 27812208
Alignment:
Q  373 aagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    ||||||||||||| ||||||||||||||||| |||| ||||||| | ||||||| ||||||||    
T  27812270 aagacatgaactaatttgaaatattaatagactcagagactaatttaagaatgacttacaaag 27812208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 353 - 435
Target Start/End: Complemental strand, 48338396 - 48338314
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    ||||| ||||| ||||||| |||||||| ||||||||||| ||||||||||||||  ||||||| | ||||| | ||||||||    
T  48338396 taattgagaaacttttgacaaagacatggactattttgaagtattaatagagtcaatgactaatttaagaatcatttacaaag 48338314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 48338501 - 48338447
Alignment:
Q  251 taattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagtt 305  Q
    |||||||||||||||| |||||||||  ||||||||| |||||||||||||||||    
T  48338501 taattgagaaacttttgacaatatttttaaatagtctatgtctttgtcaaaagtt 48338447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 353 - 435
Target Start/End: Complemental strand, 55447031 - 55446949
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    ||||| ||||| |||| || |||||||| |||||||||||||||||||||||||| ||| |||| ||| ||| | ||||||||    
T  55447031 taattgagaaaattttaacaaagacatggactattttgaaatattaatagagtcatggattaatttgacaatcacttacaaag 55446949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 39840715 - 39840662
Alignment:
Q  382 actattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| | ||||||||    
T  39840715 actattttgaaatattaatagagtcagagactaatttgagaatcacttacaaag 39840662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 1163495 - 1163574
Alignment:
Q  236 atagagacatatatctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaa 315  Q
    ||||| |||||  ||||||||| |||||||| ||| ||||||||| |||||| ||||||||||||||   ||||||||||    
T  1163495 atagaaacataggtctaattgaaaaacttttgacagtatttcaaagtagtctatgtctttgtcaaaaaaaattcaattaa 1163574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 352 - 434
Target Start/End: Complemental strand, 28860576 - 28860494
Alignment:
Q  352 ctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaa 434  Q
    |||||| |||||||||||||  ||||||| | || |||||||||| |||||||||| ||| |||| ||||| ||| |||||||    
T  28860576 ctaattgagaaatttttgacacagacatggagtagtttgaaatatcaatagagtcatggattaatttgagagtgacttacaaa 28860494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 6445161 - 6445234
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaa 200  Q
    |||| |||||| ||||||||||| || ||||||| |||| |||||||||||  |||||||| ||||| ||||||    
T  6445161 catgtcatgatcaattttgattggctcataaaaaataaatgagtcatgatctcttttgattggctaagaaaaaa 6445234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 20124095 - 20124047
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaata 401  Q
    ||||| ||||| ||||||| |||| ||||||||||||||||||||||||    
T  20124095 taattgagaaacttttgacaaagagatgaactattttgaaatattaata 20124047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 6445164 - 6445207
Alignment:
Q  169 gtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||    
T  6445164 gtcatgatcaattttgattggctcataaaaaataaatgagtcat 6445207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 42045940 - 42045897
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaatt 313  Q
    |||||||||||||||| | ||||||||||||||||| |||||||    
T  42045940 aatatttcaaaatagtatatgtctttgtcaaaagtttttcaatt 42045897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 435
Target Start/End: Original strand, 49547695 - 49547778
Alignment:
Q  352 ctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    |||||| ||||| ||||||| || |||| ||||| ||||||||||||||| | ||| |||||||| ||||| |||  |||||||    
T  49547695 ctaattgagaaaattttgactaacacattaactagtttgaaatattaatataatcatggactaatttgagagtgatgtacaaag 49547778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 353 - 435
Target Start/End: Original strand, 39840886 - 39840968
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    ||||| ||||| |||| || |||| | | |||||||||||||||||||| ||| ||| |||||| ||||||| | ||||||||    
T  39840886 taattgagaaaattttaacaaagatagggactattttgaaatattaataaagttaggaactaatttgagaatcacttacaaag 39840968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 336
Target Start/End: Original strand, 55446987 - 55447053
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaa 336  Q
    |||||||||||||||||  ||||||||| |||| ||  |||||||| | ||||||||||||| ||||    
T  55446987 aatatttcaaaatagtccatgtctttgttaaaattttctcaattaaatccctcatcatgtgaaaaaa 55447053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 20124283 - 20124238
Alignment:
Q  269 caatatttcaaaatagtctctgtctttgtcaaaagttattcaatta 314  Q
    ||||||||||||||||||  ||| ||||||||||||| ||||||||    
T  20124283 caatatttcaaaatagtcattgtttttgtcaaaagtttttcaatta 20124238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 37187564 - 37187491
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaa 200  Q
    |||| |||||| ||||||||||| || ||||||| |||| ||||| |||||  |||||||| ||||| ||||||    
T  37187564 catgtcatgatcaattttgattggctcataaaaaataaatgagtcgtgatctcttttgattggctaagaaaaaa 37187491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 37187561 - 37187520
Alignment:
Q  169 gtcatgatccattttgattagctaataaaaaataaatgagtc 210  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||    
T  37187561 gtcatgatcaattttgattggctcataaaaaataaatgagtc 37187520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 42045812 - 42045857
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaa 315  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||||    
T  42045812 aatatttcaaaatagtcattgtctatgtcaaaagtttttcaattaa 42045857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 55447220 - 55447175
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaa 315  Q
    ||||||| |||||||||||||||||| |||||||||  ||||||||    
T  55447220 aatattttaaaatagtctctgtctttctcaaaagtttctcaattaa 55447175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 6108 - 6173
Alignment:
Q  249 tctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaatta 314  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||  |||||||    
T  6108 tctaattgagaaacttttgacaataattcaaaatagtctctgtctttgtcaaaagtttctcaatta 6173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 6242 - 6295
Alignment:
Q  381 aactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaa 434  Q
    |||||||||||||||||||||||||||  ||||||| ||||||| | |||||||    
T  6242 aactattttgaaatattaatagagtcaaagactaatttgagaataacttacaaa 6295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 101212 - 101139
Alignment:
Q  139 aattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    ||||||||||| || || |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  101212 aattttgattggcttatgaaaaataaatgagtcatgatccattttgattggctaataaaaaataaatgagtcat 101139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 424
Target Start/End: Original strand, 122547 - 122606
Alignment:
Q  365 ttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaat 424  Q
    ||||||| ||||||   |||| |||||||||||||||||||||| ||||||| |||||||    
T  122547 ttttgacaaagacaaagactagtttgaaatattaatagagtcagagactaatttgagaat 122606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 248 - 422
Target Start/End: Complemental strand, 82148 - 81982
Alignment:
Q  248 atctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtga-caaaatatagagata 346  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||       |||||| ||||||||| || ||  ||||||||  |||| ||||||||     
T  82148 atctaattgagaaacttttgacaatatttcaaaatagtctttgtc-------aaagtttttcaattaagtgtcttgtcatgtgataaaaacatagagatg 82056  T
Q  347 gaaatctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgaga 422  Q
    |  |||||||| | ||| ||||| | |||| ||||| ||||| ||||||||||||||||||  ||||||| |||||    
T  82055 g--atctaattgataaacttttggcaaagatatgaattatttggaaatattaatagagtcaatgactaatttgaga 81982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 251 - 406
Target Start/End: Original strand, 39643143 - 39643299
Alignment:
Q  251 taattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgac-aaaatatagagatagaa 349  Q
    ||||||||||| |||| | |||||||||||||||| | ||||| |||||||||||  || |||||  |  || ||||||||| |||| ||||||| | ||    
T  39643143 taattgagaaatttttgataatatttcaaaatagtatatgtctctgtcaaaagtttctcgattaagcgtatcgtcatgtgacaaaaacatagagacataa 39643242  T
Q  350 atctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtc 406  Q
    |||||||| | ||| ||||||| || |||   ||||||||||||||||||| |||||    
T  39643243 atctaattgaaaaacttttgacaaaaacaatgactattttgaaatattaatggagtc 39643299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 352 - 435
Target Start/End: Original strand, 20399000 - 20399082
Alignment:
Q  352 ctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    |||||| |||||||||| || |||||| | |||| |||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  20399000 ctaattgagaaattttt-acaaagacaaggactaatttgaaatattaatagagtcagggactaatttgagaatgtcttacaaag 20399082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 8839974 - 8839925
Alignment:
Q  251 taattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaa 300  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  8839974 taattgagaaacttttgacaatatttcaaaatagtccctgtctttgtcaa 8839925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 365 - 424
Target Start/End: Original strand, 8840026 - 8840085
Alignment:
Q  365 ttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaat 424  Q
    ||||||| |||||| | ||||||||||||||||||||||||| ||||||||| |||||||    
T  8840026 ttttgacaaagacagggactattttgaaatattaatagagtcggggactaatctgagaat 8840085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 27588743 - 27588657
Alignment:
Q  130 ggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataa-aaaataaatgagtcataat 215  Q
    |||||||| |||||||||||  |||| |||| |||| |||||||| | ||| |||||| |||||||| |||||||||||||||||||    
T  27588743 ggcatgatcaattttgattggttgatgaaaactaaatgagtcatggttcatcttgattggctaataaaaaaataaatgagtcataat 27588657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 27354481 - 27354416
Alignment:
Q  249 tctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaatta 314  Q
    ||||||||| |||||||||| ||||||| |||||||| | |||||||||||||||||  |||||||    
T  27354481 tctaattgataaacttttcataatatttgaaaatagtttttgtctttgtcaaaagtttatcaatta 27354416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 31051090 - 31051146
Alignment:
Q  249 tctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagtt 305  Q
    ||||||||| |||| ||| |||||||||| ||||||||| |||||||||||||||||    
T  31051090 tctaattgaaaaacatttgacaatatttctaaatagtctatgtctttgtcaaaagtt 31051146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 235 - 335
Target Start/End: Original strand, 36184625 - 36184725
Alignment:
Q  235 catagagacatatatctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaa 334  Q
    |||||||| | | ||||||||||||||| ||| | ||||||||||| |||| |  ||||||||||||||||  || ||||| || ||| |||||||||||    
T  36184625 catagagataaaaatctaattgagaaacctttgataatatttcaaagtagtattcgtctttgtcaaaagtttctcgattaagtgtctcgtcatgtgacaa 36184724  T
Q  335 a 335  Q
    |    
T  36184725 a 36184725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 353 - 424
Target Start/End: Original strand, 8285232 - 8285303
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaat 424  Q
    ||||| ||||| ||||||| |||| ||  |||||||| ||||||||||| |||||||||||||| |||||||    
T  8285232 taattgagaaacttttgacaaagatatagactattttaaaatattaatatagtcagggactaatttgagaat 8285303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 29857812 - 29857745
Alignment:
Q  133 atgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaa 200  Q
    ||||| |||||||||||||| || |||| |||| ||||||||||||||||||||| | ||||| ||||    
T  29857812 atgatcaattttgattgactcatgaaaaataaatgagtcatgatccattttgattggataatagaaaa 29857745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 8840058 - 8840016
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaat 312  Q
    ||||||||||||||||| |||||||||||||||||| ||||||    
T  8840058 aatatttcaaaatagtccctgtctttgtcaaaagtttttcaat 8840016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 248 - 405
Target Start/End: Complemental strand, 9900389 - 9900231
Alignment:
Q  248 atctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgac-aaaatatagagata 346  Q
    ||||||| ||||||||||  ||||||| ||||||||||   ||| |||||||||| ||  |||||||| | |||   |||||||| |||| ||||| | |    
T  9900389 atctaatcgagaaactttggacaatatctcaaaatagttcatgtttttgtcaaaaatttctcaattaaatcccttgacatgtgacaaaaacatagataca 9900290  T
Q  347 gaaatctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagt 405  Q
     | |||||||| ||||| ||||||| |||| |  || |||||| |||||||||||||||    
T  9900289 aagatctaattgagaaacttttgacaaagataaaaattattttaaaatattaatagagt 9900231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 36184772 - 36184730
Alignment:
Q  272 tatttcaaaatagtctctgtctttgtcaaaagttattcaatta 314  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  36184772 tatttcaaaatagtcactgtctttgtcaaaagtttttcaatta 36184730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 9663064 - 9663101
Alignment:
Q  178 cattttgattagctaataaaaaataaatgagtcataat 215  Q
    |||||||||| |||||||||||||||||||||||||||    
T  9663064 cattttgattggctaataaaaaataaatgagtcataat 9663101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 31065970 - 31066026
Alignment:
Q  249 tctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagtt 305  Q
    ||||||||| |||| ||| |||||||||| | ||||||| |||||||||||||||||    
T  31065970 tctaattgaaaaacgtttgacaatatttctatatagtctatgtctttgtcaaaagtt 31066026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 12640245 - 12640178
Alignment:
Q  275 ttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaatataga 342  Q
    ||||||||||||| ||  ||||||||||||| ||||||||| | |||| |||||||| |||| |||||    
T  12640245 ttcaaaatagtctttgattttgtcaaaagtttttcaattaagtccctcgtcatgtgaaaaaacataga 12640178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 19205901 - 19205976
Alignment:
Q  133 atgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgag 208  Q
    ||||| ||||||||||| || || |||| || | |||||||||||||||| |||| ||||||| ||||||| ||||    
T  19205901 atgatcaattttgattggctcatgaaaaatagatgagtcatgatccatttagattggctaatataaaataagtgag 19205976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 416
Target Start/End: Complemental strand, 31051052 - 31050989
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaat 416  Q
    ||||| ||||| ||||||| |||||  | ||||||||||||||||| ||||||||| |||||||    
T  31051052 taattgagaaacttttgacaaagacgaggactattttgaaatattagtagagtcagagactaat 31050989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 416
Target Start/End: Complemental strand, 31065931 - 31065868
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaat 416  Q
    ||||| ||||| ||||||| ||||||   |||||||||||||||||||||||| || |||||||    
T  31065931 taattgagaaacttttgacaaagacaatgactattttgaaatattaatagagttagagactaat 31065868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 416
Target Start/End: Complemental strand, 33391468 - 33391405
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaat 416  Q
    ||||| ||||| |||| || ||||||||||||| |||||||||| |||  ||||||||||||||    
T  33391468 taattgagaaacttttaacaaagacatgaactaatttgaaatatcaatgaagtcagggactaat 33391405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 435
Target Start/End: Original strand, 36184729 - 36184812
Alignment:
Q  352 ctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    |||||| | ||| ||||||| ||||||   |||||||||||||| ||||||||| || ||||||| ||||| ||| ||||||||    
T  36184729 ctaattgaaaaacttttgacaaagacagtgactattttgaaatactaatagagttagagactaatttgagagtgatttacaaag 36184812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 381 - 435
Target Start/End: Original strand, 11275810 - 11275864
Alignment:
Q  381 aactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    ||||| ||| ||||||||||| |||||| ||||||| ||||||||| ||||||||    
T  11275810 aactaatttaaaatattaataaagtcagagactaatttgagaatgatttacaaag 11275864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 353 - 434
Target Start/End: Original strand, 5971885 - 5971966
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaa 434  Q
    ||||| ||||| ||||||| ||||||   |||| ||| |||||||||||||||| | ||||||| ||| ||||| |||||||    
T  5971885 taattgagaaagttttgacaaagacaatgactagtttaaaatattaatagagtctgagactaatctgaaaatgacttacaaa 5971966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 9637662 - 9637707
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaa 315  Q
    ||||||| |||||||||||||||||||||| || || |||||||||    
T  9637662 aatattttaaaatagtctctgtctttgtcataaatttttcaattaa 9637707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 31065887 - 31065932
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaa 315  Q
    |||||||||||||||||  |||||||||||||||||  ||||||||    
T  31065887 aatatttcaaaatagtcattgtctttgtcaaaagtttctcaattaa 31065932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 67180 - 67268
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcataat 215  Q
    |||| |||||| ||||||||||| ||| | |||| |||| | ||||| |  |||||||||| |||||||||||||||||||||||||||    
T  67180 catgacatgatcaattttgattggctggtgaaaactaaatgtgtcataaatcattttgattggctaataaaaaataaatgagtcataat 67268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 75285 - 75373
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcataat 215  Q
    |||| |||||| ||||||||||| ||| | |||| |||| | ||||| |  |||||||||| |||||||||||||||||||||||||||    
T  75285 catgacatgatcaattttgattggctggtgaaaactaaatgtgtcataaatcattttgattggctaataaaaaataaatgagtcataat 75373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 52539 - 52615
Alignment:
Q  139 aattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcataat 215  Q
    |||||||||||  || | |||| |||| |||||||| ||||| |||||| |||||||||||||||||||||||||||    
T  52539 aattttgattggttggtgaaaactaaatgagtcatggtccatcttgattggctaataaaaaataaatgagtcataat 52615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 27434824 - 27434748
Alignment:
Q  139 aattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcataat 215  Q
    |||||||||||  || | |||| |||| |||||||| ||||| |||||| |||||||||||||||||||||||||||    
T  27434824 aattttgattggttggtgaaaactaaatgagtcatggtccatcttgattggctaataaaaaataaatgagtcataat 27434748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 1607968 - 1608058
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaatta--aacgagtcatgatccattttgattagctaataaaaaataaatgagtcataat 215  Q
    |||| |||||| ||||||||||| ||||| |||| ||  || | |||||||  |||||||||| ||||||||||||||||||||| |||||    
T  1607968 catgacatgatcaattttgattggctgatgaaaactataaatgtgtcatgaatcattttgattggctaataaaaaataaatgagttataat 1608058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 4856915 - 4857000
Alignment:
Q  132 catgataaattttgattgactgataaaaatta--aacgagtcatgatccattttgattagctaataaaaaataaatgagtcataat 215  Q
    |||||| ||||||||||| ||||| |||| ||  || | |||||||  |||||||||| | |||||||||||||||||||||||||    
T  4856915 catgatcaattttgattggctgatgaaaactataaatgtgtcatgaatcattttgattggttaataaaaaataaatgagtcataat 4857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 11550367 - 11550282
Alignment:
Q  132 catgataaattttgattgactgataaaaatta--aacgagtcatgatccattttgattagctaataaaaaataaatgagtcataat 215  Q
    |||||| ||||||||||| ||||| |||| ||  || | |||||||  |||||||||| | |||||||||||||||||||||||||    
T  11550367 catgatcaattttgattggctgatgaaaactataaatgtgtcatgaatcattttgattggttaataaaaaataaatgagtcataat 11550282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 19121975 - 19122061
Alignment:
Q  349 aatctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    ||||||||| ||||| || | || ||||||| ||||| |||||||||||||||||||||  ||||||| ||| | ||| ||||||||    
T  19121975 aatctaattgagaaacttctaacaaagacataaactagtttgaaatattaatagagtcatagactaatttgaaagtgacttacaaag 19122061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 15123706 - 15123795
Alignment:
Q  282 tagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgac-aaaatatagagatagaaatctaattaagaaatttttga 370  Q
    |||||| ||||||||||||||| | ||||||||| |  || |||||||||| |||||||||||||| |||| ||||| | ||| ||||||    
T  15123706 tagtctatgtctttgtcaaaagcttttcaattaagtttcttatcatgtgacaaaaatatagagataaaaatttaattgaaaaacttttga 15123795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 8446984 - 8447044
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtg 330  Q
    |||||||||||||||||  ||||||||| ||||||| ||||||||| | | ||||||||||    
T  8446984 aatatttcaaaatagtcaatgtctttgttaaaagtttttcaattaagtccttcatcatgtg 8447044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 8455788 - 8455848
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtg 330  Q
    |||||||||||||||||  ||||||||| ||||||| ||||||||| | | ||||||||||    
T  8455788 aatatttcaaaatagtcaatgtctttgttaaaagtttttcaattaagtccttcatcatgtg 8455848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 21394388 - 21394424
Alignment:
Q  251 taattgagaaacttttcacaatatttcaaaatagtct 287  Q
    |||||||||||||||| ||||||||||||||||||||    
T  21394388 taattgagaaacttttgacaatatttcaaaatagtct 21394424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 290 - 405
Target Start/End: Original strand, 32520093 - 32520209
Alignment:
Q  290 gtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaa-tatagagatagaaatctaattaagaaatttttgacgaagacatgaactattt 388  Q
    |||||||||||||||| ||||||||| || ||| ||||||||||||| || | ||||| | || ||||| | ||| | ||||  || ||||  |||||||    
T  32520093 gtctttgtcaaaagtttttcaattaagtgtctcgtcatgtgacaaaaatacaaagataaagatttaattgacaaactgttgattaaaacatagactattt 32520192  T
Q  389 tgaaatattaatagagt 405  Q
    | |||||||||||||||    
T  32520193 taaaatattaatagagt 32520209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 4749567 - 4749524
Alignment:
Q  169 gtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||    
T  4749567 gtcatgatcaattttgattggctcataaaaaataaatgagtcat 4749524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 4749469 - 4749411
Alignment:
Q  143 ttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaat 201  Q
    |||||||||| ||||||| |||| |||||||||||  |||||||| ||||| |||||||    
T  4749469 ttgattgactcataaaaaataaatgagtcatgatctcttttgattggctaagaaaaaat 4749411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 4749570 - 4749496
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaat 201  Q
    |||| |||||| ||||||||||| || ||||||| |||| |||||||||||  ||||||||  |||| |||||||    
T  4749570 catgtcatgatcaattttgattggctcataaaaaataaatgagtcatgatctcttttgattgactaagaaaaaat 4749496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 8447068 - 8447134
Alignment:
Q  249 tctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaa 315  Q
    ||||||||| ||| |||| |||||| |||||||||||   |||||||||||||||||  ||||||||    
T  8447068 tctaattgataaatttttgacaataattcaaaatagtacttgtctttgtcaaaagtttctcaattaa 8447134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 8455872 - 8455938
Alignment:
Q  249 tctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagttattcaattaa 315  Q
    ||||||||| ||| |||| |||||| |||||||||||   |||||||||||||||||  ||||||||    
T  8455872 tctaattgataaatttttgacaataattcaaaatagtacttgtctttgtcaaaagtttctcaattaa 8455938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 387 - 421
Target Start/End: Complemental strand, 17333345 - 17333311
Alignment:
Q  387 tttgaaatattaatagagtcagggactaatatgag 421  Q
    |||||||||||||||||||||||||||||| ||||    
T  17333345 tttgaaatattaatagagtcagggactaatttgag 17333311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 307 - 435
Target Start/End: Original strand, 17437676 - 17437806
Alignment:
Q  307 ttcaattaattgcctcatcatgtgacaaaat-atagagatagaaatctaattaagaaatttttgacgaagacatgaactatttt-gaaatattaatagag 404  Q
    ||||||||| | |||| | |||||||||||  ||||||| | | |||||||| ||||| |||| || ||||||  ||||||||| |||||||||||||||    
T  17437676 ttcaattaagtccctccttatgtgacaaaaacatagagacaaagatctaattgagaaacttttaacaaagacagaaactatttttgaaatattaatagag 17437775  T
Q  405 tcagggactaatatgagaatgaattacaaag 435  Q
    | |  ||||| | | ||| ||||||||||||    
T  17437776 taatagactatttttagagtgaattacaaag 17437806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 529 - 571
Target Start/End: Original strand, 20972004 - 20972046
Alignment:
Q  529 aaagagatgtctagcgcaacagcaagcaacatagaggataaat 571  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||    
T  20972004 aaagagatgtctatcgcaacatcaagaaacatagaggataaat 20972046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 405
Target Start/End: Original strand, 3890026 - 3890079
Alignment:
Q  352 ctaattaagaaatttttgacgaagacatgaactattttgaaatattaatagagt 405  Q
    |||||| ||||| ||||||| ||||||||||||| |||  ||||||||||||||    
T  3890026 ctaattgagaaacttttgacaaagacatgaactagtttagaatattaatagagt 3890079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 9530603 - 9530550
Alignment:
Q  382 actattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    |||| ||||||||||||||| ||| || ||||||| ||||||||| ||||||||    
T  9530603 actagtttgaaatattaataaagttagagactaatttgagaatgacttacaaag 9530550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 17333335 - 17333443
Alignment:
Q  270 aatatttcaaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaatatagagatagaaatctaattaagaaatttttg 369  Q
    ||||||||||| ||| ||| |||||||||||||||   |||||||  | |||| |||||  |||||| ||| ||| ||| |||||||| ||||| |||||    
T  17333335 aatatttcaaactagcctc-gtctttgtcaaaagtatctcaattaggtccctcgtcatggcacaaaacataaagacagagatctaattgagaaacttttg 17333433  T
Q  370 acgaagacat 379  Q
    || |||||||    
T  17333434 acaaagacat 17333443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 434
Target Start/End: Original strand, 26330318 - 26330391
Alignment:
Q  361 aaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgagaatgaattacaaa 434  Q
    |||| |||||| ||||||  ||||||||| |||||||||||||||||  ||||||| ||| ||| | |||||||    
T  26330318 aaatctttgacaaagacaacaactattttaaaatattaatagagtcaatgactaatttgataatcacttacaaa 26330391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 1851 - 1795
Alignment:
Q  249 tctaattgagaaacttttcacaatatttcaaaatagtctctgtctttgtcaaaagtt 305  Q
    ||||||||| |||| ||| |||||||||| ||||||||| |||||||||||||||||    
T  1851 tctaattgaaaaacatttgacaatatttctaaatagtctatgtctttgtcaaaagtt 1795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 416
Target Start/End: Original strand, 1889 - 1952
Alignment:
Q  353 taattaagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaat 416  Q
    ||||| ||||| ||||||| |||||  | ||||||||||||||||| ||||||||| |||||||    
T  1889 taattgagaaacttttgacaaagacgaggactattttgaaatattagtagagtcagagactaat 1952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 278 - 401
Target Start/End: Complemental strand, 11034 - 10910
Alignment:
Q  278 aaaatagtctctgtctttgtcaaaagttattcaattaattgcctcatcatgtgacaaaat-atagagatagaaatctaattaagaaatttttgacgaaga 376  Q
    |||||||||| ||||||| ||||||||| ||||||||| |  ||| || ||||| ||||  ||||| | | |||| ||||| ||||| ||||||| ||||    
T  11034 aaaatagtctttgtctttatcaaaagtttttcaattaagtctctcgtcgtgtgaaaaaaacatagaaacataaatttaattgagaaacttttgacaaaga 10935  T
Q  377 catgaactattttgaaatattaata 401  Q
     || ||||||||| |||||||||||    
T  10934 tataaactattttaaaatattaata 10910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 22112 - 22197
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    |||| |||||| |||||| |||| || || |||| |||| ||||||||||  |||||||||  | |||||||||||||||||||||    
T  22112 catgtcatgatcaattttaattggctaatgaaaaataaatgagtcatgatttattttgattgacaaataaaaaataaatgagtcat 22197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 18164 - 18080
Alignment:
Q  130 ggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaata-aaaaataaatgagtcata 213  Q
    |||||||| |||||||||||  |||| |||| |||| |||||||| | ||| |||||| ||||||| |||||| |||||||||||    
T  18164 ggcatgatcaattttgattggttgatgaaaactaaatgagtcatggttcatcttgattggctaatataaaaatgaatgagtcata 18080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 17021 - 17104
Alignment:
Q  127 catggcatgataaattttgattgactgataaaaattaaacgagtcatgatccattttgattagctaataaaaaataaatgagtca 211  Q
    |||| |||||| ||||||||||| || ||||||  ||||  |||||||||| ||||| ||| | |||||||||||||||||||||    
T  17021 catgtcatgatcaattttgattg-ctaataaaatataaataagtcatgatctattttaattggttaataaaaaataaatgagtca 17104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 9279 - 9237
Alignment:
Q  170 tcatgatccattttgattagctaataaaaaataaatgagtcat 212  Q
    |||||||||||||||||| ||| || |||||||||||||||||    
T  9279 tcatgatccattttgattggctcatgaaaaataaatgagtcat 9237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 435
Target Start/End: Original strand, 4796 - 4849
Alignment:
Q  382 actattttgaaatattaatagagtcagggactaatatgagaatgaattacaaag 435  Q
    |||||||| ||||||||||||| |||| ||||||| ||||||| | ||||||||    
T  4796 actattttaaaatattaatagaatcagagactaatttgagaataatttacaaag 4849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 422
Target Start/End: Complemental strand, 17181 - 17116
Alignment:
Q  357 taagaaatttttgacgaagacatgaactattttgaaatattaatagagtcagggactaatatgaga 422  Q
    |||||||  |||||| |||||| |||||| ||| |||||||||||||||  ||||||||| |||||    
T  17181 taagaaacgtttgacaaagacaggaactagtttaaaatattaatagagtttgggactaatttgaga 17116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University