View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_low_10 (Length: 423)
Name: NF18727_low_10
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 90 - 405
Target Start/End: Original strand, 5155452 - 5155769
Alignment:
| Q |
90 |
atctaaattggactcaaacaagagatttaaagaaggaattattaggttttttatatgaggaacaaggtaattaactaattaagagaaagcagactcatag |
189 |
Q |
| |
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|||||||||||| |||||||| | ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
5155452 |
atctaaattggagtcaaacaacaaattgaaagaaggaattattaggttttt-atatgaggaacaaggaaattaactaattaagagaaagcagactcagag |
5155550 |
T |
|
| Q |
190 |
ttgcaacattaaactcaaatacggaatcagcggaaatagcggtacactcgacttagggaggaaaacggaaccaggggaattgattgacaaacgataagaa |
289 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5155551 |
ttggaacattaaactcaaatatggaatcagcggaaatagcggtacactcgacttagggaggaaaacggaaccaggggaattgatcgacaaacgataagaa |
5155650 |
T |
|
| Q |
290 |
acgagggtttttaagtttgagaagtggaaggaaatcagggtgaatcatttcaaaagattcattgaaagcatgggaggaag---aagaagaagctgggtat |
386 |
Q |
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||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||| |
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| T |
5155651 |
acgggggtttttaagtttaagaagtggaaggaaatcaaggtgaatcatttcaaaagattcattgaaagcatgggaagaagaagaagaagaagtcgggtat |
5155750 |
T |
|
| Q |
387 |
ttgtgtcgagcaagaagat |
405 |
Q |
| |
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||||||||||||||||||| |
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| T |
5155751 |
ttgtgtcgagcaagaagat |
5155769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 87 - 210
Target Start/End: Original strand, 3384653 - 3384775
Alignment:
| Q |
87 |
tccatctaaattggactcaaacaagagatttaaagaaggaattattaggttttttatatgaggaacaaggtaattaactaattaagagaaagcagactca |
186 |
Q |
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|||||||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
3384653 |
tccatctaaattggactcaaacaacaaattgaaagaaggaattattaggtttt-tatatgaggaacaaagcaattaactaattaagagaaagcagactca |
3384751 |
T |
|
| Q |
187 |
tagttgcaacattaaactcaaata |
210 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
3384752 |
gagttgcaacattaaactcaaata |
3384775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 5155340 - 5155430
Alignment:
| Q |
1 |
gtcacaaccagtatatcagattccatcagtactagaagacaacaattaccaataattaccagtacaagttggaaacaaaaacctactccat |
91 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5155340 |
gtcacaactagtatatcagattccatcagtactagaagacaacaattaccaataattaccaatacaagttggaaacaaaaacctactccat |
5155430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 87 - 378
Target Start/End: Complemental strand, 8530799 - 8530510
Alignment:
| Q |
87 |
tccatctaaattggactcaaacaagagatttaaagaaggaattattaggttttttatatgaggaacaaggtaattaactaattaagagaaagcagactca |
186 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8530799 |
tccatctaaattggactcaaacaacatatttaaagaatgaattattaggttttt-atatgaggaacaaggtaattaactaattaagagaaagtagactca |
8530701 |
T |
|
| Q |
187 |
tagttgcaacattaaactcaaatacggaatcagcggaaatagcggtacactcgacttagggaggaaaacggaaccaggggaattgattgacaaacgataa |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8530700 |
gagttgcaacattaaactcaaatacggaatcagcggaaataacggtacactcgacttagggaggaaaacggaaccaggggaattgatcgacaaacgataa |
8530601 |
T |
|
| Q |
287 |
gaaacgagggtttttaagtttgagaagtggaaggaaatcagggtgaatcatttcaaaagattcattgaaagcatgggaggaagaagaagaag |
378 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| |
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| T |
8530600 |
gaaacgagggttttaaagtttgagaagtggaaggaaatcagggtgaatcatttcaaaagattca-tgaaagcatggaaagaagaagaagaag |
8530510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 8530898 - 8530818
Alignment:
| Q |
1 |
gtcacaaccagtatatcagattccatcagtactagaagacaacaattaccaataattaccagtacaagttggaaacaaaaacctactccat |
91 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8530898 |
gtcacaactagtatatcagattccatcagtactagaagacaacaattaccaa----------tacaagttggaaacaaaaacctactccat |
8530818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 398
Target Start/End: Complemental strand, 8530513 - 8530481
Alignment:
| Q |
366 |
gaagaagaagaagctgggtatttgtgtcgagca |
398 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |
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| T |
8530513 |
gaagaagaagaagccgggtatttgtgtcgagca |
8530481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 203
Target Start/End: Original strand, 40721808 - 40721924
Alignment:
| Q |
87 |
tccatctaaattggactcaaacaagagatttaaag-aaggaattattaggttttttatatgaggaacaaggtaattaactaattaagagaaagcagactc |
185 |
Q |
| |
|
|||||||||||||||||||||||| | | | ||| |||||| |||||||||| | |||||||||||||| ||| ||||||| ||||||||| | |||| |
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| T |
40721808 |
tccatctaaattggactcaaacaacaaactcaaaccaaggaactattaggtttct-atatgaggaacaagacaataaactaataaagagaaagaacactc |
40721906 |
T |
|
| Q |
186 |
atagttgcaacattaaac |
203 |
Q |
| |
|
| || ||||||||||||| |
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| T |
40721907 |
agagatgcaacattaaac |
40721924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 203
Target Start/End: Original strand, 26794834 - 26794950
Alignment:
| Q |
87 |
tccatctaaattggactcaaacaagagatttaaag-aaggaattattaggttttttatatgaggaacaaggtaattaactaattaagagaaagcagactc |
185 |
Q |
| |
|
|||||||||||||||||||||||| | | | ||| |||||| |||||||||| | |||||||||||||| ||| ||||||| ||||||||| | |||| |
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| T |
26794834 |
tccatctaaattggactcaaacaacaaactgaaaccaaggaactattaggtttct-atatgaggaacaagacaataaactaataaagagaaagaacactc |
26794932 |
T |
|
| Q |
186 |
atagttgcaacattaaac |
203 |
Q |
| |
|
| || ||||||||||||| |
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| T |
26794933 |
agagatgcaacattaaac |
26794950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 27222996 - 27222916
Alignment:
| Q |
122 |
aaggaattattaggttttttatatgaggaacaaggtaattaactaattaagagaaagcagactcatagttgcaacattaaac |
203 |
Q |
| |
|
|||||| |||||||||| | |||||||||||||| ||| ||||||| ||||||||| | ||||| | ||||||||||||| |
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| T |
27222996 |
aaggaactattaggtttct-atatgaggaacaagacaataaactaataaagagaaagaacactcagtgatgcaacattaaac |
27222916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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