View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_low_11 (Length: 409)
Name: NF18727_low_11
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 12781524 - 12781756
Alignment:
| Q |
13 |
aatatcatagtcactatcgtcacgttgtaaatttggcgataaaactcttatgattgtgtttgatttgtaccatacttgatctagaaactagtcatgatgt |
112 |
Q |
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| T |
12781524 |
aatatcatagtcactatcgtcacgttgtaaatttggagataaaactcttatgattgtgtttgatttgtaccatacttgatctagaaactagtcatgatgt |
12781623 |
T |
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| Q |
113 |
cgga----------agttagagattgcacaaaagcatgaatttttatccctcattaaactatgcaacaactttttgtcnnnnnnntagattgtttgtttt |
202 |
Q |
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| T |
12781624 |
cggacaatacatgtagttagagattgcacaaaagcatgaatttttatccctcattaaattatgcgacaactttttgtcaaaaaaataaattgtttgtttt |
12781723 |
T |
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| Q |
203 |
gggaatcaaacacactctatatttttgtaaggc |
235 |
Q |
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| T |
12781724 |
gggaatcaaacacactctatatttttgtaaggc |
12781756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 12720309 - 12720539
Alignment:
| Q |
13 |
aatatcatagtcactatcgtcacgttgtaaatttggcgataaaactcttatgattgtgtttgatttgtaccatacttgatctagaaactagtcatgatgt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12720309 |
aatatcatagtcactatcgtcacgttgtaaatttggagataaaactcttatgattgtgtttgatttgtaccatacttgatctagaaactagtcatgatgt |
12720408 |
T |
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| Q |
113 |
cgga----------agttagagattgcacaaaagcatgaatttttatccctcattaaactatgcaacaactttttgtcnnnnnnntagattgtttgtttt |
202 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||| ||| |
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| T |
12720409 |
cggacaatacatgtagttagagattgcacaaaagcatgaatttttatccctcattaaaccatgcgacaactttttgtcaaaaaaatagattgtttggttt |
12720508 |
T |
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| Q |
203 |
gggaatcaaacacactctatatttttgtaag |
233 |
Q |
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| T |
12720509 |
gggaatcaaacacactctatatttttgtaag |
12720539 |
T |
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