View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_low_12 (Length: 404)
Name: NF18727_low_12
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 44710262 - 44710651
Alignment:
| Q |
1 |
caataaacaatttactttgacattattaaacccactagtagtannnnnnnnncac-ttcgtctctattgaatgattattctcattttgtaacttttcaat |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44710262 |
caataaacaatttactttgacattattaaacccactagtagtatttttttttttccttcgtctctattgaatgattattctcattttgtaagttttcaat |
44710361 |
T |
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| Q |
100 |
ttgcaataatcactgtggataagacaggcccatccataatttggacaaactatcataattcgataacaaatatcatgacctatttattcaaccattatca |
199 |
Q |
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| T |
44710362 |
ttgcaataatcactgtggataagacaggcccatccataatttggacaaactatcataattcgataataaatatcatgacctatttattcaaccattatca |
44710461 |
T |
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| Q |
200 |
tatcatgttccaactttttccttttcaacaaactagatgtaatttgtttgtttgttcaatattttaagaatgataaattcacattgtagttggatgataa |
299 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44710462 |
tatcatgttccaacttttttcttttcaacaaactagatgtaatttgtttgtttgttcaatattttaagaatgataaattcacattgtagttggatgataa |
44710561 |
T |
|
| Q |
300 |
aaacgagcatccacaagaaatgggcaagtgagggcaaataggtcaaaacagaaggagcatatttattgggaggaagaaagtgactcttct |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44710562 |
aaacgagcatccacaagaaatgggcaagtgagggcaaataggtcaaaacagaaggagcatatttattgggaggaagaaagtgactcttct |
44710651 |
T |
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