View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_low_16 (Length: 352)
Name: NF18727_low_16
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 34264071 - 34263752
Alignment:
| Q |
11 |
cacagacaatagcaatggaaggttcagcacaaatcactgtatcggaatctcattcaattgaggaggaaaagacaccgatgtcatgggatgaaataataga |
110 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34264071 |
cacacacaatagcaatggagggttcagcacaaatcactgtatcggaatctcattcaattgaggaggaaaagacaccgatgtcatgggatgaaataataga |
34263972 |
T |
|
| Q |
111 |
aaaaagtttatcaaattttggttggatggatttctttcaagctgttcttgtagcatttgctatgttctttgatgcacagcagtcattcataagcatttac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34263971 |
aaaaagtttatcaaattttggttggatggatttctttcaagctgttcttgtagcatttgctatgttctttgatgcacaacagtcattcataagcatttac |
34263872 |
T |
|
| Q |
211 |
actgacaattacccaaaatggcactgcacaaacacaaacacaaacacaaattcatcatgtacttcgtcctctgatatttgcaaactctcaagatcttctt |
310 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34263871 |
actgataattacccaaaatggcactgcacaaacacaaaca------caaattcatcatgtacttcgtcctctgatatttgcaaactctcaagatcttctt |
34263778 |
T |
|
| Q |
311 |
ggtcttgggacacacacccttcaaac |
336 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
34263777 |
ggtcttgggacacacacccttcaaac |
34263752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 193 - 336
Target Start/End: Complemental strand, 35622807 - 35622670
Alignment:
| Q |
193 |
tcattcataagcatttacactgacaattacccaaaatggcactgcacaaacacaaacacaaacacaaattcatcatgtacttcgtcctctgatatttgca |
292 |
Q |
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| T |
35622807 |
tcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaa------ttcatcatgttcttcatcctctgatatttgca |
35622714 |
T |
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| Q |
293 |
aactctcaagatcttcttggtcttgggacacacacccttcaaac |
336 |
Q |
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||||| ||||||| ||||||||||||||||||||| |||||||| |
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| T |
35622713 |
aactcccaagatcctcttggtcttgggacacacactcttcaaac |
35622670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 35623098 - 35622991
Alignment:
| Q |
91 |
tcatgggatgaaataatagaaaaaagtttatcaaattttggttggatggatttctttcaagctgttcttgtagcatttgctatgttctttgatgcacagc |
190 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | || ||||||||||||||||| | |
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| T |
35623098 |
tcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaac |
35622999 |
T |
|
| Q |
191 |
agtcattc |
198 |
Q |
| |
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| |||||| |
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| T |
35622998 |
aatcattc |
35622991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 91 - 336
Target Start/End: Original strand, 37599767 - 37600006
Alignment:
| Q |
91 |
tcatgggatgaaataatagaaaaaagtttatcaaattttggttggatggatttctttcaagctgttcttgtagcatttgctatgttctttgatgcacagc |
190 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37599767 |
tcatgggatgaaattatagaaatttttttatcaaattttggttgaatggatttatttcaagctgttcttgtagcaattgctatgttctttgatgcacaag |
37599866 |
T |
|
| Q |
191 |
agtcattcataagcatttacactgacaattacccaaaatggcactgcacaaacacaaacacaaacacaaattcatcatgtacttcgtcctctgatatttg |
290 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||| || || | |||||||||||||||||||||||||| | |||||||||||||| |
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| T |
37599867 |
agtcatttataagcatttacactgataattacccaaaatggcattg------catagacacaaacacaaattcatcatgtactccatcctctgatatttg |
37599960 |
T |
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| Q |
291 |
caaactctcaagatcttcttggtcttgggacacacacccttcaaac |
336 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37599961 |
caaactctagagatcttcttggtcttgggacacacacccttcaaac |
37600006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 37605482 - 37605591
Alignment:
| Q |
178 |
tttgatgcacagcagtcattcataagcatttacactgacaattacccaaaatggcactgcacaaacacaaacacaaacacaaattcatcatgtacttcgt |
277 |
Q |
| |
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||||||||||| || ||||||| | |||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| ||| | | |
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| T |
37605482 |
tttgatgcacaacaatcattcacaggcatttaccttgataattacccaaaatggcactgcacaaacac--------acacaaattcatcatgcactccat |
37605573 |
T |
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| Q |
278 |
cctctgatatttgcaaac |
295 |
Q |
| |
|
|||||||||||||||||| |
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| T |
37605574 |
cctctgatatttgcaaac |
37605591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 14542739 - 14543046
Alignment:
| Q |
17 |
caatagcaatggaaggttcagcacaaatcactgtatcggaatctcattcaa---ttgaggaggaaaagacaccgat---gtcatgggatgaaataataga |
110 |
Q |
| |
|
||||||||||||||||||||| |||||| | |||| | ||||||||||| | ||||| | ||||||| ||| || ||||||||||| ||| ||||| |
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| T |
14542739 |
caatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattataga |
14542838 |
T |
|
| Q |
111 |
aaaaagtttatcaaattttggttggatggatttctttcaagctgttcttgtagcatttgctatgttctttgatgcacagcagtcattcataagcatttac |
210 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||| || |||||||||||||||||| |
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| T |
14542839 |
aaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttac |
14542938 |
T |
|
| Q |
211 |
actgacaattacccaaaatggcactgcacaaacacaaacacaaacacaaattcatcatgtacttcgtcctctgatatttgcaaactctcaagatcttctt |
310 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||| ||| ||||| ||||||||||| ||||||||| |||||||||||| |
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| T |
14542939 |
actgataattacccaaaatggcactg------------------cacaaattcaatatgcacttcatcctctgatatatgcaaactcccaagatcttctt |
14543020 |
T |
|
| Q |
311 |
ggtcttgggacacacacccttcaaac |
336 |
Q |
| |
|
|||||||||||||||| ||||||||| |
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| T |
14543021 |
ggtcttgggacacacatccttcaaac |
14543046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 14580848 - 14580541
Alignment:
| Q |
17 |
caatagcaatggaaggttcagcacaaatcactgtatcggaatctcattcaa---ttgaggaggaaaagacaccgat---gtcatgggatgaaataataga |
110 |
Q |
| |
|
||||||||||||||||||||| |||||| | |||| ||||||||||| | ||||| | ||||||| ||| || ||||||||||| ||| ||||| |
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| T |
14580848 |
caatagcaatggaaggttcagtacaaattaatgtacttgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattataga |
14580749 |
T |
|
| Q |
111 |
aaaaagtttatcaaattttggttggatggatttctttcaagctgttcttgtagcatttgctatgttctttgatgcacagcagtcattcataagcatttac |
210 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||| || |||||||||||||||||| |
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|
| T |
14580748 |
aaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttac |
14580649 |
T |
|
| Q |
211 |
actgacaattacccaaaatggcactgcacaaacacaaacacaaacacaaattcatcatgtacttcgtcctctgatatttgcaaactctcaagatcttctt |
310 |
Q |
| |
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||||| |||||||||||||||||||||| |||||||| ||| ||||| ||||||||||| ||||||||| |||||||||||| |
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| T |
14580648 |
actgataattacccaaaatggcactgca------------------caaattcaatatgcacttcatcctctgatatatgcaaactcccaagatcttctt |
14580567 |
T |
|
| Q |
311 |
ggtcttgggacacacacccttcaaac |
336 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
14580566 |
ggtcttgggacacacatccttcaaac |
14580541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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