View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18727_low_23 (Length: 311)
Name: NF18727_low_23
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 111 - 293
Target Start/End: Original strand, 40208081 - 40208263
Alignment:
| Q |
111 |
caagtcacgttatgtgggatagttcagtatctaaaccttgttggagttgccattggatacactatagcttctgccataagcatgatgtaagtttaattga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40208081 |
caagtcacgttatgtgggatagttcagtatctaaaccttgtaggagttgccattggatacactatagcttctgccataagcatgatgtaagtttaattga |
40208180 |
T |
|
| Q |
211 |
gatcttaatcatttagttaatttcattgaagaaaatatccaaagaatatggtataattgactttggttaattctgtatgaaac |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40208181 |
gatcttaatcatttagttaatttcattgaagaaaatatccaaagaatatggtataattaactttggttaattctgtatgaaac |
40208263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 111 - 293
Target Start/End: Original strand, 40200447 - 40200629
Alignment:
| Q |
111 |
caagtcacgttatgtgggatagttcagtatctaaaccttgttggagttgccattggatacactatagcttctgccataagcatgatgtaagtttaattga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40200447 |
caagtcacgttatgtgggatagttcagtatctcaatcttgcgggggctgccattggatacactatagcttctgccataagcatgatgtaagtttaattga |
40200546 |
T |
|
| Q |
211 |
gatcttaatcatttagttaatttcattgaagaaaatatccaaagaatatggtataattgactttggttaattctgtatgaaac |
293 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||| |||||| ||| |||||||||||||||||| |||||||||| |
|
|
| T |
40200547 |
gatcttaatcatatagttaatttcatccaagaaaatatccaaggaatattgtagaattgactttggttaattttgtatgaaac |
40200629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 111 - 293
Target Start/End: Original strand, 40203947 - 40204130
Alignment:
| Q |
111 |
caagtcacgttatgtgggatagttcagtatctaaaccttgttggagttgccattggatacactatagcttctgccataagcatgatgtaagtttaattga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
40203947 |
caagtcacgttatgtgggatagttcagtatctcaaccttgttggagttgccattggatacactatagcctcagccataagcatgatgtaagt----ttga |
40204042 |
T |
|
| Q |
211 |
gatcttaatcattt-----agttaatttcattgaagaaaatatccaaagaatatggtataattgactttggttaattctgtatgaaac |
293 |
Q |
| |
|
||||||| |||| | ||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
40204043 |
gatcttattcatattttaaagttaattttattcaagaaaatatccaaggaatatggtagaattgactttggttaattttgtatgaaac |
40204130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 40207975 - 40208017
Alignment:
| Q |
5 |
ggtagattattctctgtgaatatatataaagaaaagcaaattc |
47 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40207975 |
ggtaaattcttctctgtgaatatatataaagaaaagcaaattc |
40208017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University