View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_low_25 (Length: 296)
Name: NF18727_low_25
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 55824871 - 55825138
Alignment:
| Q |
19 |
atctttcagtgcaaggagtcttcttttcttccaacggaaaggcagaaagccaacgcaagaactaatcattctgttttctttcccatttagcttttgaatc |
118 |
Q |
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| T |
55824871 |
atctttcagtgcaaggagtcttcttttcttccaacggaaaggcagaaagccaacgcaagaaccaatcattctgttttctttcccatttagcttttgaatc |
55824970 |
T |
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| Q |
119 |
tctgctttcagttctagatgctcaacatcgaagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55824971 |
tctgctttcagttctagatgctcaacatcgaagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacg |
55825070 |
T |
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| Q |
219 |
ttcaattgccacttttgcagaattttccatctctgcataccacaaagccgtctccattgcagcctttg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825071 |
ttcaattgccacttttgcagaattttccatctctgcataccacaaagccgtctccattgcagcctttg |
55825138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 56150110 - 56149843
Alignment:
| Q |
19 |
atctttcagtgcaaggagtcttcttttcttccaacggaaaggcagaaagccaacgcaagaactaatcattctgttttctttcccatttagcttttgaatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
56150110 |
atctttcagtgcaaggagtcttcttttcttccaacggaaaggcagaaagccaacgcaagaaccaatcattctgttttctttcccatttagcttttgaatc |
56150011 |
T |
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| Q |
119 |
tctgctttcagttctagatgctcaacatcgaagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56150010 |
tctgctttcagttctagatgctcaacatcgaagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacg |
56149911 |
T |
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| Q |
219 |
ttcaattgccacttttgcagaattttccatctctgcataccacaaagccgtctccattgcagcctttg |
286 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149910 |
ttcaattgccacttttgcagaatttgccatctctgcataccacaaagccgtctccattgcagcctttg |
56149843 |
T |
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