View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_low_27 (Length: 292)
Name: NF18727_low_27
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 47820125 - 47820387
Alignment:
| Q |
18 |
gagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaatgaca |
117 |
Q |
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| T |
47820125 |
gagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaatgaca |
47820224 |
T |
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| Q |
118 |
agatcttcaataatcggaatccggaggtggtggatattgtggaggatattaaggtggttacttggtggtggtcgttggagataatggcaatgtctccgtg |
217 |
Q |
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| T |
47820225 |
agatcttcaataatcggaat---ttggtggtggatattgtggaggatattaaggtggttacttggtggtggtcgttggagataatggcaatgtctccgtg |
47820321 |
T |
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| Q |
218 |
tatgttctatgagtggtgttagaatccgagggactgtctctcgcggttgtgctaatttgatgatgt |
283 |
Q |
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| T |
47820322 |
tatgttctatgagtggtgttggaatccaagggactgtctctcgcggttgtgctaatttgaggatgt |
47820387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 37035471 - 37035725
Alignment:
| Q |
18 |
gagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaatgaca |
117 |
Q |
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| T |
37035471 |
gagtgttggagtggcggggagaggattaagcgtattcgtcaggggttaagattaatttggcatgttacgatttgggttttatggaaagctagaaatgaca |
37035570 |
T |
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| Q |
118 |
agatcttcaataatcggaatccggaggtggtggatattgtggaggatattaaggtggttacttggtggtggtcgttggagataatggcaatgtctccgtg |
217 |
Q |
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| T |
37035571 |
agatttttaataatcggaatccggaggtggtggatattgtggaggatattaaggtattgacttggcggtggtcgttggagataattgcaatgcctccttg |
37035670 |
T |
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| Q |
218 |
tatgttctatgagtggtgttagaatccgagggactgtctctcgcggttgtgctaa |
272 |
Q |
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| T |
37035671 |
tatgttctatgagtggtgttgggatccgagggaatgcctttcgcgattgtgctaa |
37035725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 12825573 - 12825341
Alignment:
| Q |
18 |
gagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaatgaca |
117 |
Q |
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| T |
12825573 |
gagtgttggtgtggtggagagaggaataagcgaatccgtaatggtttaagacttattcggcattctacgagtttggttttgtggaaagcaaggaatgata |
12825474 |
T |
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| Q |
118 |
agatcttcaataatcggaatccggaggtggtggatattgtggaggatattaaggtggttacttggtggtggtcgttggagataatggcaatgtctccgtg |
217 |
Q |
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|||| || ||||||||||| | | ||||| || || ||||| ||| | |||||| | |||||| ||||||||||||| | ||| | ||| |||| || |
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| T |
12825473 |
agatttttaataatcggaactcagcggtggatgaaatggtggatgatgtaaaggtgttgacttggcggtggtcgttggatagaatttctatgcctccttg |
12825374 |
T |
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| Q |
218 |
tatgttctatgagtggtgttagaatccgaggga |
250 |
Q |
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| T |
12825373 |
tatgtattatgaatggtgttggaatccgaggga |
12825341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 34774779 - 34774684
Alignment:
| Q |
18 |
gagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaat |
113 |
Q |
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| T |
34774779 |
gagtgttggtgcggaggggagaggaataagagaactcgtaacggattaaggcttatttggcatactacgatttgggtgttatggaaagctaggaat |
34774684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 42748965 - 42748870
Alignment:
| Q |
18 |
gagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaat |
113 |
Q |
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||||||||| |||| ||||||||||| ||||| | |||| | || ||||| | ||||||||| | ||||||||||| |||||||||||||||||| |
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| T |
42748965 |
gagtgttggagcggaggggagaggaataagagaactcgtagcggattaaggcttatttggcataccacgatttgggtgttatggaaagctaggaat |
42748870 |
T |
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