View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18727_low_3 (Length: 578)
Name: NF18727_low_3
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_low_3 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 16 - 563
Target Start/End: Original strand, 22449 - 22994
Alignment:
| Q |
16 |
atgataggaaattatttcatttgatcaaagcatacacacacaatcacattcaaaacagaacacaaccaaattcagtgttgagtggatacctagtagtcga |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22449 |
atgataggaaattatttcatttgatcaaagcatacacacacaatcacattcaaaacagaacacaaccaaattcagcgttgagtggatacctagtagtcga |
22548 |
T |
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| Q |
116 |
gaaacatccgc-gagatcgatctcaatgaagtccatggttttgaccttcaccaagaatactatgcagtgaaacagttgaacaaaagctaacaactttgtg |
214 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
22549 |
gaaacatccgcagagatcgatctcaatgaagtccatggt---gaccttcaccaagaatactatctagtgaaactgttgaacaaaagctaacaactttgtg |
22645 |
T |
|
| Q |
215 |
aaacctattcatcagtgatggcaattgaggcactctcctccaaatacaattaccattctcaccaccaccgtgactgcgaatctcacagacacaagccggg |
314 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||| ||| |||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22646 |
aaacctattcatcagtgatggcaactgaggcaccctcctccaataacacttactattctcaccaccaccgcgactgcgaatctcacagacacaagccggg |
22745 |
T |
|
| Q |
315 |
tacatcctatgataatcctcattgaaaacatatataagatcacccaacccaacacacttcaagctagcaaatctatcatcctcatcaccatcaaacaaac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22746 |
tacatcctatgataatcctcattgaaaacatatataagatcacccaacccaacacacttcaagctagcaaatctatcatcctcatcaccatcaaacaaac |
22845 |
T |
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| Q |
415 |
tagaaagcaaatcatgaggcataacaccaatctcacaaatctccatacttttttcatcaacctcccacaaattgaaactagacccacttggtgaattaca |
514 |
Q |
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| T |
22846 |
tagaaagcaaatcatgaggcataacaccaatctcacaaatctccatacttttttcatcaacctcccacaaattgaaactagacccacttggtgaattaca |
22945 |
T |
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| Q |
515 |
aacaccagctaaaacaagcctttccctacaagcaatcaagaaagaaaac |
563 |
Q |
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| T |
22946 |
aacaccagctaaaacaagcctttccctacaagcaatcaagaaagaaaac |
22994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 16 - 563
Target Start/End: Original strand, 21308834 - 21309379
Alignment:
| Q |
16 |
atgataggaaattatttcatttgatcaaagcatacacacacaatcacattcaaaacagaacacaaccaaattcagtgttgagtggatacctagtagtcga |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21308834 |
atgataggaaattatttcatttgatcaaagcatacacacacaatcacattcaaaacagaacacaaccaaattcagcgttgagtggatacctagtagtcga |
21308933 |
T |
|
| Q |
116 |
gaaacatccgc-gagatcgatctcaatgaagtccatggttttgaccttcaccaagaatactatgcagtgaaacagttgaacaaaagctaacaactttgtg |
214 |
Q |
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| T |
21308934 |
gaaacatccgcagagatcgatctcaatgaagtccatggt---gaccttcaccaagaatactatctagtgaaactgttgaacaaaagctaacaactttgtg |
21309030 |
T |
|
| Q |
215 |
aaacctattcatcagtgatggcaattgaggcactctcctccaaatacaattaccattctcaccaccaccgtgactgcgaatctcacagacacaagccggg |
314 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||| ||| |||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21309031 |
aaacctattcatcagtgatggcaactgaggcaccctcctccaataacacttactattctcaccaccaccgcgactgcgaatctcacagacacaagccggg |
21309130 |
T |
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| Q |
315 |
tacatcctatgataatcctcattgaaaacatatataagatcacccaacccaacacacttcaagctagcaaatctatcatcctcatcaccatcaaacaaac |
414 |
Q |
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| T |
21309131 |
tacatcctatgataatcctcattgaaaacatatataagatcacccaacccaacacacttcaagctagcaaatctatcatcctcatcaccatcaaacaaac |
21309230 |
T |
|
| Q |
415 |
tagaaagcaaatcatgaggcataacaccaatctcacaaatctccatacttttttcatcaacctcccacaaattgaaactagacccacttggtgaattaca |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21309231 |
tagaaagcaaatcatgaggcataacaccaatctcacaaatctccatacttttttcatcaacctcccacaaattgaaactagacccacttggtgaattaca |
21309330 |
T |
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| Q |
515 |
aacaccagctaaaacaagcctttccctacaagcaatcaagaaagaaaac |
563 |
Q |
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| T |
21309331 |
aacaccagctaaaacaagcctttccctacaagcaatcaagaaagaaaac |
21309379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 36070083 - 36069992
Alignment:
| Q |
17 |
tgataggaaattatttcatttgatcaaagcatacacacacaatcacattcaaaacagaacacaaccaaattcagtgttgagtggatacctag |
108 |
Q |
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|||||| |||||||||||| ||||||||| ||| ||| | ||||||||||||| |||||||| ||||||||| |||||||||||| ||||| |
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| T |
36070083 |
tgatagcaaattatttcatatgatcaaaggatatacaaatcatcacattcaaaatagaacacagccaaattcactgttgagtggatgcctag |
36069992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 36069982 - 36069911
Alignment:
| Q |
169 |
gaatactatgcagtgaaacagttgaacaaaagctaacaa-ctttgtgaaacctattcatcagtgatggcaat |
239 |
Q |
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| T |
36069982 |
gaatattatgcaatgaaacaattgaaggaaagctaaaaaactttgagaaacctattcatgagtgatggcaat |
36069911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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