View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18727_low_42 (Length: 244)
Name: NF18727_low_42
Description: NF18727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18727_low_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 47536205 - 47536432
Alignment:
| Q |
1 |
gaaaaccgtaaaatgcgaaaacctcttcctcaattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnnctctaga |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
47536205 |
gaaaaccgtaaaacgcgaaaacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgattttttttttctgga |
47536304 |
T |
|
| Q |
101 |
gaaatcttttcataattannnnnnnngaatgttaattgtttttcatagtttattttgtttgactatgcacacaccgtaagttgggatcaatacaaataga |
200 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47536305 |
gaaatcttttcataattattttttttgaatgctaattgtttttcatagtttattttgtttgactatgcacacactgtaagttgggatcaatacaaataga |
47536404 |
T |
|
| Q |
201 |
aagaggcgtgaattatttgtggtggatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
47536405 |
aagaggcgtgaattatttgtggtggatt |
47536432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 23153194 - 23152966
Alignment:
| Q |
1 |
gaaaaccgtaaaatgcgaaaacctcttcctcaattct-tctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnnctctag |
99 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||| || | | |
|
|
| T |
23153194 |
gaaaactgtaaaatgcgaaaacctcttcctcgattccgtctttcaattcacaaggtatgtaaagttgtgtaatttataaaaggtgaatttttttctttgg |
23153095 |
T |
|
| Q |
100 |
agaaatcttttcataattannnnnnnngaatgttaattgtttttcatagtttattttgtttgactatgcacacaccgtaagttgggatcaatacaaatag |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
23153094 |
agaaatcttttcataattcttttttttgaatgttaattgtttgtcatagtttattttgtttgactatgtacacactgtaagttgggatcaatacaaatag |
23152995 |
T |
|
| Q |
200 |
aaagaggcgtgaattatttgtggtggatt |
228 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
|
|
| T |
23152994 |
aaagaggcgtgaattatttatggtggatt |
23152966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 44218384 - 44218610
Alignment:
| Q |
1 |
gaaaaccgtaaaatgcgaaaacctcttcctcaattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnnctctaga |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || |
|
|
| T |
44218384 |
gaaaaccgtaaaacgcgaaaacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaagatgattttttt-ctcttga |
44218482 |
T |
|
| Q |
101 |
gaaatcttttcataattannnnnnnngaatgttaattgtttttcatagtttattttgtttgactatgcacacaccgtaagttgggatcaatacaaataga |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||| |
|
|
| T |
44218483 |
gaaatcttttcataattattttttttgaatgttaattgtttttcatagtttattttgtttgacaatgcacacactgtaagttgggataaatacaaataga |
44218582 |
T |
|
| Q |
201 |
aagaggcgtgaattatttgtggtggatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
44218583 |
aagaggcgtgaattatttgtggtggatt |
44218610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 21569796 - 21569961
Alignment:
| Q |
2 |
aaaaccgtaaaatgcgaaaacctcttcctcaattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnnctctagag |
101 |
Q |
| |
|
||||| |||||| ||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
21569796 |
aaaacagtaaaacgcgaaaacctcttcctcgattcgtctttcaattcacgtggtatgtaaagttgtgtaatttataaaaggtga-tttttttctctggag |
21569894 |
T |
|
| Q |
102 |
aaatcttttcataatt-annnnnnnngaatgttaattgtttttcatagtttattttgtttgactatg |
167 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
21569895 |
aaatcttttcataattcttttttttttaatgttaattgtttgtcatagtttattttatttgactatg |
21569961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 21569963 - 21570001
Alignment:
| Q |
190 |
atacaaatagaaagaggcgtgaattatttgtggtggatt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21569963 |
atacaaatagaaagaggcgtgaattatttgtggtggatt |
21570001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 371535 - 371309
Alignment:
| Q |
2 |
aaaaccgtaaaatgcgaaaacctcttcctcaattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnnctctagag |
101 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
371535 |
aaaaccgtaaaacgcgaaaacctcttcctcgatttttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgattttttt-ctctggag |
371437 |
T |
|
| Q |
102 |
aaatcttttcataattannnnnnnn-gaatgttaattgtttttcatagtttattttgtttgactatgcacacaccgtaagttgggatcaatacaaataga |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
371436 |
aaatcttttcataattatttttttttgaatgttaattgtttttcatggtttattttgtttgactatgcacacaccgtaagttgggatcaatacaaataga |
371337 |
T |
|
| Q |
201 |
aagaggcgtgaattatttgtggtggatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
371336 |
aagaggcgtgaattatttgtggtggatt |
371309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42962791 - 42962563
Alignment:
| Q |
1 |
gaaaaccgtaaaatgcgaaaacctcttcctcaattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnnctctaga |
100 |
Q |
| |
|
||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
42962791 |
gaaaaccgtaaaacgtgaaaatctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgattttttt-ctctgga |
42962693 |
T |
|
| Q |
101 |
gaaatcttttcataattannnnnnnnga------atgttaattgtttttcatagtttattttgtttgactatgcacacaccgtaagttgggatcaataca |
194 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42962692 |
gaaatcttttcataattctttttttttatttttaatgttaattgtttttcatggtttattttgtttgactatgcacacactgtaagttgggatcaataca |
42962593 |
T |
|
| Q |
195 |
aatagaaagaggcgtgaattatttgtggtg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42962592 |
aatagaaagaggcgtgaattatttgtggtg |
42962563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 27226051 - 27226017
Alignment:
| Q |
51 |
gtggtatgtaaagttgtgtaatttataaaaggtga |
85 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27226051 |
gtggtatgtaaagttgtgtaattgataaaaggtga |
27226017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University